View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_low_37 (Length: 380)
Name: NF1262_low_37
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_37 |
 | |
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| [»] chr3 (6 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 233 - 380
Target Start/End: Complemental strand, 29199879 - 29199732
Alignment:
| Q |
233 |
cctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatatccta |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29199879 |
cctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattaaatgaacaaagcatatccta |
29199780 |
T |
|
| Q |
333 |
caaaatggctaaacagaaacatcgaaagcagacctgaatttgaagtag |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29199779 |
caaaatggctaaacagaaacatcgaaagcaggcctgaatttgaagtag |
29199732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 29200095 - 29199944
Alignment:
| Q |
16 |
atcaatgtatcaggaccttgtcattctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgcnnnnnnncccaaatgaggggtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29200095 |
atcaatgtatcaggaccttgtcattctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgcaaaaaaacccaaatgaggggtt |
29199996 |
T |
|
| Q |
116 |
taaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttaga |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29199995 |
taaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttaga |
29199944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 229 - 380
Target Start/End: Complemental strand, 19768368 - 19768217
Alignment:
| Q |
229 |
ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| ||| |
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| T |
19768368 |
ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatgaacaaagcctat |
19768269 |
T |
|
| Q |
329 |
cctacaaaatggctaaacagaaacatcgaaagcagacctgaatttgaagtag |
380 |
Q |
| |
|
| ||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
19768268 |
cgcacaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtag |
19768217 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 19768562 - 19768432
Alignment:
| Q |
37 |
cattctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgcnnnnnnncccaaatgaggggtttaaattcttgcaaatgcaaat |
136 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19768562 |
cattctcatttcaagtttaaccttccataatcaaacaatctagggaaaatagtatgcaaaaaaacccaaatgaggggtttaaattcttgcaaatgcaaat |
19768463 |
T |
|
| Q |
137 |
ccataaaaatgtcaaacaaagaagtgttaga |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
19768462 |
ccataaaaatgtcaaacaaagaagtgttaga |
19768432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 12572313 - 12572396
Alignment:
| Q |
297 |
gcaaagagtaaaattgaatgaacaaagcatatcctacaaaatggctaaacagaaacatcgaaagcagacctgaatttgaagtag |
380 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||| ||||||||||||||| ||||| || ||| ||||||||||||||||||||| |
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| T |
12572313 |
gcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaaggcagacctgaatttgaagtag |
12572396 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 13548777 - 13548860
Alignment:
| Q |
297 |
gcaaagagtaaaattgaatgaacaaagcatatcctacaaaatggctaaacagaaacatcgaaagcagacctgaatttgaagtag |
380 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||| ||||||||||||||| ||||| || ||| ||||||||||||||||||||| |
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|
| T |
13548777 |
gcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaattgaaggcagacctgaatttgaagtag |
13548860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 229 - 380
Target Start/End: Complemental strand, 22083061 - 22082910
Alignment:
| Q |
229 |
ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| ||| |
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| T |
22083061 |
ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatgaacaaagcctat |
22082962 |
T |
|
| Q |
329 |
cctacaaaatggctaaacagaaacatcgaaagcagacctgaatttgaagtag |
380 |
Q |
| |
|
| |||||||||| |||||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
22082961 |
cgcacaaaatggcaaaacagaaacattgaaggcatacctgaatttgaagtag |
22082910 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 37616725 - 37616855
Alignment:
| Q |
37 |
cattctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgcnnnnnnncccaaatgaggggtttaaattcttgcaaatgcaaat |
136 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37616725 |
cattctcatttcaagtttaaccttccataatcacacaatctagggaaaatagtatgcaaaaaaacccaaatgaggggtttaaattcttgcaaatgcaaat |
37616824 |
T |
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| Q |
137 |
ccataaaaatgtcaaacaaagaagtgttaga |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37616825 |
ccataaaaatgtcaaacaaagaagtgttaga |
37616855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 229 - 367
Target Start/End: Original strand, 37616919 - 37617057
Alignment:
| Q |
229 |
ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||| |||||||||||||||||||||| ||||| ||| |
|
|
| T |
37616919 |
ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacaaattaggcaaagagtaaaattgaatgaaaaaagcctat |
37617018 |
T |
|
| Q |
329 |
cctacaaaatggctaaacagaaacatcgaaagcagacct |
367 |
Q |
| |
|
| ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
37617019 |
cgcacaaaatggctaaacagaaacattgaaggcagacct |
37617057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 25899400 - 25899478
Alignment:
| Q |
16 |
atcaatgtatcaggaccttgtc-attctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgc |
93 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25899400 |
atcaatgtatcaggaccttgcccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
25899478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 229 - 380
Target Start/End: Original strand, 51389585 - 51389729
Alignment:
| Q |
229 |
ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || || || ||||||||| |||||||| ||| |
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|
| T |
51389585 |
ggtccctatttatacatgagaagtcctaaagaagagggtcatggattcaagcatgcaacaatgaataggc-------aaaattgaacgaacaaagtctat |
51389677 |
T |
|
| Q |
329 |
cctacaaaatggctaaacagaaacatcgaaagcagacctgaatttgaagtag |
380 |
Q |
| |
|
| |||||| ||||||||||||||| | || |||||| |||| ||||||||| |
|
|
| T |
51389678 |
cgcacaaaacggctaaacagaaacaccaaaggcagacttgaaattgaagtag |
51389729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 51389463 - 51389521
Alignment:
| Q |
109 |
aggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttaga |
167 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
51389463 |
aggggcttaaattctcgcaaatgcaaatccataaaaagatcaaacaaagaagttttaga |
51389521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 51389372 - 51389411
Alignment:
| Q |
19 |
aatgtatcaggaccttgtcattctcatttcaggtttaacct |
59 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
51389372 |
aatgtatcaggac-ttgtcattctcctttcaggtttaacct |
51389411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 32663108 - 32662990
Alignment:
| Q |
229 |
ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || ||| ||||| ||||||||||| |||| | ||||||||||| |||||||||||| ||| |
|
|
| T |
32663108 |
ggtccctatttatacatgagaagtcctaaacaagagggtaatgaattcacgcatgcaacaatgattgggaaaagagtaaaactgaatgaacaaactctat |
32663009 |
T |
|
| Q |
329 |
cctacaaaatggctaaaca |
347 |
Q |
| |
|
| ||||||| ||||||||| |
|
|
| T |
32663008 |
cgtacaaaacggctaaaca |
32662990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 8028212 - 8028252
Alignment:
| Q |
19 |
aatgtatcaggaccttgtcattctcatttcaggtttaacct |
59 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
8028212 |
aatgtatcaggaccttgccattctcctttcaggtttaacct |
8028252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 32663270 - 32663200
Alignment:
| Q |
19 |
aatgtatcaggaccttgtcattctcatttcaggtttaacctttcataatcacacaatctagggaaattagt |
89 |
Q |
| |
|
|||||||||||| | || |||||||| |||||| |||||||| | | ||||||||||| ||||||| |||| |
|
|
| T |
32663270 |
aatgtatcaggaacctgccattctcaattcaggcttaaccttcctttatcacacaatccagggaaaatagt |
32663200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 380
Target Start/End: Complemental strand, 770466 - 770342
Alignment:
| Q |
253 |
cctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatatcctacaaaatggctaaacagaaac |
352 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||| |||| | ||| |||||||||||||| |
|
|
| T |
770466 |
cctaaagaagagggtcatggattcaaacatgcaacaacgattaggcaaatagtaaaattgaatagacaaagtctatcgt---aaacggctaaacagaaac |
770370 |
T |
|
| Q |
353 |
atcgaaagcagacctgaatttgaagtag |
380 |
Q |
| |
|
| | || ||||| |||| ||||||||| |
|
|
| T |
770369 |
accaaaggcagaattgaaattgaagtag |
770342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 770592 - 770534
Alignment:
| Q |
109 |
aggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttaga |
167 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
770592 |
aggggcttaaattctcgcaaatgcaaatccataaaaaggccaaacaaagaagttttaga |
770534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 4351787 - 4351704
Alignment:
| Q |
297 |
gcaaagagtaaaattgaatgaacaaagcatatcctacaaaatggctaaacagaaacatcgaaagcagacctgaatttgaagtag |
380 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||| ||||||||||||||| ||||| |||||| |||||||| |||||||||||| |
|
|
| T |
4351787 |
gcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaatcgaaggcagacctaaatttgaagtag |
4351704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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