View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_low_38 (Length: 379)
Name: NF1262_low_38
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_38 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 3421962 - 3422252
Alignment:
| Q |
30 |
gactcactggtcactactacctcacaaaaaataaaagctgattcaaattttctgtacatgttgtaccattttagaatctaacttcaacatgttaaggacc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3421962 |
gactcactggtcactactacctcacaaaaaataaaagctgattcaaattttctgaacatgttgtaccattttagaatctaacttcaacatgttaaggacc |
3422061 |
T |
|
| Q |
130 |
cactattactcagaaaatccagtagtgctgcaccatatgatccacaagcattttagggtttacctcttcatgaaaatatttcaatatgacatttgcattt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3422062 |
cactattactcagaaaatccagtagtgctgcaccatatgatccacaagcattttagggttaacctcttcatgaaaatatttcaatatgacatttgcattt |
3422161 |
T |
|
| Q |
230 |
caaagggttcatttgtataagcaagtggttgagttcaaccgatgaatgtttaattatttttgtaaagataaagagtttaagcagttaatga |
320 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3422162 |
caaagggtttatttgtataagcaagtggttgagttcaaccgatgaatgtttaattctttttgtaaagataaagagtttaagcagttaatga |
3422252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University