View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_low_39 (Length: 378)
Name: NF1262_low_39
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 349
Target Start/End: Complemental strand, 32036600 - 32036258
Alignment:
| Q |
7 |
agtgagatgaaaggcataaagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttg |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32036600 |
agtgaaatgaaaggcataaagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttg |
32036501 |
T |
|
| Q |
107 |
caccttacttccattctaatgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32036500 |
caccttacttccattctaatgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaa |
32036401 |
T |
|
| Q |
207 |
acaaagagaagacacagtgaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatggatgcattggttccatagctatgttgcaaagg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32036400 |
acaaagagaagacacagtgaattctcttgcttatgaagctgaagcaaggcttagagacccagtttacggatgcattggttccatagctatgttgcaaagg |
32036301 |
T |
|
| Q |
307 |
aagatgatggaacttcagcatgatttggccattgctaaggaac |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32036300 |
aagatgatggaacttcagcatgatttggccattgctaaggaac |
32036258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 25 - 347
Target Start/End: Complemental strand, 35808949 - 35808627
Alignment:
| Q |
25 |
aagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttgcaccttacttccattcta |
124 |
Q |
| |
|
||||||||||| ||| | ||||| || ||||||||||| |||||||| ||||||||||||||| |||| |||| ||||||| || ||||| | || |
|
|
| T |
35808949 |
aagggttatgaaccaaggtcaagttcctcttgtgcagcctgcaaatttctgaaaagaagatgcataccaaattgtatatttgcgccatactttcgctccg |
35808850 |
T |
|
| Q |
125 |
atgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagt |
224 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||| ||||| || || |
|
|
| T |
35808849 |
atgagtgcaagaaattcgcgaaagttcacaaagtatttggagcaagcaatgtgagcaagattctgattgaagttccagaggaacaaagggaagaaactgt |
35808750 |
T |
|
| Q |
225 |
gaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatggatgcattggttccatagctatgttgcaaaggaagatgatggaacttcag |
324 |
Q |
| |
|
||||||| | |||||||||||||| ||||||||||||||||| || ||||||||||| ||| | ||||| | ||||||||||||||| | |||||||| |
|
|
| T |
35808749 |
gaattctttggcttatgaagctgatgcaaggcttagagaccctgtctatggatgcataggtgctatagcacttttgcaaaggaagatggttgaacttcaa |
35808650 |
T |
|
| Q |
325 |
catgatttggccattgctaagga |
347 |
Q |
| |
|
|||||| | |||||||| ||||| |
|
|
| T |
35808649 |
catgatcttgccattgcaaagga |
35808627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 600801 - 600908
Alignment:
| Q |
148 |
gttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagtgaattctcttgcttatgaagctg |
247 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| || || | |||||| | | ||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
600801 |
gttcacaaaatatttggtgcaagcaatgttagcaaaattctaaatgaagtcttacctcatcaaagagaagatacagtgaattctctagcttatgaagctg |
600900 |
T |
|
| Q |
248 |
aagcaagg |
255 |
Q |
| |
|
|||||||| |
|
|
| T |
600901 |
aagcaagg |
600908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 591284 - 591351
Alignment:
| Q |
208 |
caaagagaagacacagtgaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatgg |
275 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||||||| ||| ||| ||||| ||||| |
|
|
| T |
591284 |
caaagagaagatacggtgaattctctagcttatgaagctgaagcaaggattaaagatccagtgtatgg |
591351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 12360798 - 12360671
Alignment:
| Q |
148 |
gttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagtgaattctcttgcttatgaagctg |
247 |
Q |
| |
|
||||||||| ||||||| ||||||||||| || || | || | |||||||| | | | ||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
12360798 |
gttcacaaaatatttggtgcaagcaatgtaagtaaacttctgaatgaagtgcaaccacatcaaagggaagatgcagtgaactctcttgcttatgaagctg |
12360699 |
T |
|
| Q |
248 |
aagcaaggcttagagacccagtttatgg |
275 |
Q |
| |
|
| |||||| | | ||| ||||||||||| |
|
|
| T |
12360698 |
aggcaaggataaaagatccagtttatgg |
12360671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University