View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_40 (Length: 376)
Name: NF1262_low_40
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 46736481 - 46736844
Alignment:
| Q |
11 |
cagagattcctagatgctgtccaagtgcattagcaggtataatgaaaagatgctgggacaagaatccagaaaagcgtccggaaatgaaagatgtggtgac |
110 |
Q |
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| T |
46736481 |
cagagattcctagatgctgtccaagtgcattagcagatataatgaaaagatgctgggacaagaatccagaaaagcgtccggaaatgaaagatgtggtgac |
46736580 |
T |
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| Q |
111 |
aatgttggaagaaattgatacaagcaaaggaggcggaatgataagagaagaccagactccattttgtttttgttttaaacctgctcgtggcccataatag |
210 |
Q |
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| T |
46736581 |
aatgttggaaaaaattgatacaagcaaaggaggcggaatgataagagaagaccagactccattttgtttttgttttaaacctgctcgtggcccataataa |
46736680 |
T |
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| Q |
211 |
tcatactcaatttttaatgagtattattatgtacattaagtaagtcattgtcgtttatggaaatatcggagttgttgtctatggaaatatcggaggtatg |
310 |
Q |
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| T |
46736681 |
tcatactcaatttttaatgagtataattatgtacattaagtaagtcattgtcgtctatggaaatatcggagttgttgtctatggaaatatcggaggtatg |
46736780 |
T |
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| Q |
311 |
ttgcagccttcaactgtcatttgttggcttgcttgtcaatttactagttgacttcatatatatt |
374 |
Q |
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| T |
46736781 |
ttgcagccttcaactgtcatttgttggcttgcttgtcaatttactggttgacttcatatatatt |
46736844 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 986195 - 986262
Alignment:
| Q |
85 |
cgtccggaaatgaaagatgtggtgacaatgttggaagaaattgatacaagcaaaggaggcggaatgat |
152 |
Q |
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| T |
986195 |
cgtccggaaatgaaggatgtggtgataatgctagaagcactggatacaagcaaaggtggtggaatgat |
986262 |
T |
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