View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_42 (Length: 364)
Name: NF1262_low_42
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 75 - 335
Target Start/End: Original strand, 51803383 - 51803643
Alignment:
| Q |
75 |
tccaacaatatcacaccaaaactgtacacatcacactttgttgttgctcttggtgaatatgcatattctgtcacaccatccatcaaaacaaattaattag |
174 |
Q |
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| T |
51803383 |
tccaacaaaatcacaccaaaactgtacacatcacactttgtggttgctcttggtgaatatgcatattctgtcacaccatccatcaaaacaaattaaatag |
51803482 |
T |
|
| Q |
175 |
atttaaacaagcttacgatatgataataagattacttaccgcttaagttaaccacatgactaataccctaatacaaaatactgtttaatcaaatcctacc |
274 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51803483 |
atttaaacaagcttacaatatgataataagattacttaccgcttaagttaaccacatcactaataccctaatacaaaatactgtttaatcaaatcctacc |
51803582 |
T |
|
| Q |
275 |
tctgtccctaaatatataatccttttgaagttttaactgtgttaattattattttaccaac |
335 |
Q |
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| T |
51803583 |
tctgtccctaaatatataatccttttgaagttttaactgtgttaattattattttaccaac |
51803643 |
T |
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