View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_44 (Length: 355)
Name: NF1262_low_44
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 10873335 - 10873068
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
100 |
Q |
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| T |
10873335 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
10873236 |
T |
|
| Q |
101 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873235 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
10873136 |
T |
|
| Q |
201 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
268 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873135 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
10873068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 10878406 - 10878139
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878406 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
10878307 |
T |
|
| Q |
101 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
200 |
Q |
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| T |
10878306 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
10878207 |
T |
|
| Q |
201 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
268 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878206 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
10878139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 10883477 - 10883210
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883477 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
10883378 |
T |
|
| Q |
101 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
200 |
Q |
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| T |
10883377 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
10883278 |
T |
|
| Q |
201 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
268 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883277 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
10883210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 10866970 - 10867244
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaatttt----gttgaaattact---cat |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |
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| T |
10866970 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactttaaattttatttgttgaaattactagtcat |
10867069 |
T |
|
| Q |
94 |
ttggataagtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatac |
193 |
Q |
| |
|
||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
10867070 |
ttgaataattgtttgattttctctgcgatatttatttaggtcaagtagatttgcaagattacagagtattaaagctactatggcaggaaagaatttgtac |
10867169 |
T |
|
| Q |
194 |
actaggttcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
268 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10867170 |
actagattcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
10867244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 10887395 - 10887125
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaatttt----gttgaaattactc---at |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| |||||||||||| || |
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| T |
10887395 |
ttttgattccctctctcacactttcaacaagtaa----ttttcaattttgaactttcttcggtttcactttaaattttatttgttgaaattactacttat |
10887300 |
T |
|
| Q |
94 |
ttggataagtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatac |
193 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10887299 |
ttggataactgattgattttctctgcaatatttatttaggtcaagtagatttgcaagattacagagtattaaagctactatggcaggaaagaatttatac |
10887200 |
T |
|
| Q |
194 |
actaggttcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
268 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10887199 |
actagattcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
10887125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 75 - 268
Target Start/End: Original strand, 39676594 - 39676787
Alignment:
| Q |
75 |
ttttgttgaaattactcatttggataagtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactat |
174 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||||||| | | ||||| |||||||||||||||||||||||||| |||| | ||||||||||||||| |
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|
| T |
39676594 |
ttttgttgaaatgactcatttggataattaattgattttgttttggatatatatttaggtcaagtagatttgcaagattacaaaatattaaagctactat |
39676693 |
T |
|
| Q |
175 |
ggctggaaagaatttatacactaggttcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
268 |
Q |
| |
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| T |
39676694 |
agcaggaaagaatttatacactagattcacttgttcaaccggtgatgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgat |
39676787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 125 - 268
Target Start/End: Original strand, 10046746 - 10046889
Alignment:
| Q |
125 |
ttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggttcacttgttcaacgggtgatgcaa |
224 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||| ||||||||| || ||||| |||||||||||||||| ||| || || |||||||| |||||||||| |
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|
| T |
10046746 |
ttattcaggtcaagtagatttgcgagattacagaatattaaagcaacaatggcaggaaagaatttatacattagatttacatgttcaaccggtgatgcaa |
10046845 |
T |
|
| Q |
225 |
tggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
268 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
10046846 |
tgggaatgaacatggtatcaaaaggtgtacaaaacgtacttgat |
10046889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10046590 - 10046623
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaa |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
10046590 |
ttttgattccctctctcacactttcaacaagtaa |
10046623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39676534 - 39676585
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaa |
52 |
Q |
| |
|
|||||||||| ||||||| || ||||||||||||||| |||| ||||||||| |
|
|
| T |
39676534 |
ttttgattccatctctcatacattcaacaagtaagtatttttgaattttgaa |
39676585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 37949453 - 37949509
Alignment:
| Q |
212 |
acgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
268 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||| || || ||||| |||||| |
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|
| T |
37949453 |
acgggtgatgccatggggatgaacatggtctccaaaggggtgcagaacgttcttgat |
37949509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 30708537 - 30708484
Alignment:
| Q |
215 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgat |
268 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || |||||| |
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|
| T |
30708537 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgat |
30708484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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