View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_low_45 (Length: 352)
Name: NF1262_low_45
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_45 |
 | |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 9114804 - 9115149
Alignment:
| Q |
11 |
cacagagcacaaatgataaataaataatattcatgttaaaatagaacacattgttcccttttttctcccgaaaatataactcttacttgatatatttatg |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
9114804 |
cacatagcacaaatgataaataaataatattcatgttaaaatatagcacattgttcctttttttctccccaaaatataactcttacttgatatatttatg |
9114903 |
T |
|
| Q |
111 |
cggactaaacattcatttaaatctaatttaaattattcnnnnnnnnn---aagtgaatattaaagtgcaaaaacaacacacgacaacaaaatgacatccc |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
9114904 |
cggactaaacatttatttaaatctaatttaaattattcttttttttttttaagtgaacattaaagtgcaaaaacaacacacgacagcaatatgacatccc |
9115003 |
T |
|
| Q |
208 |
aatggcaaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccgga |
307 |
Q |
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|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |
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|
| T |
9115004 |
aatggcaaagtatagtttggaccatcaaattcattactccaacttacaccacctcaatataaaccattgatatattataaatttattttaaaggaccgaa |
9115103 |
T |
|
| Q |
308 |
tcttatgataaaaaagatgttacaa-actgttattttagtggtgta |
352 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
9115104 |
tcttatgatgaaaaagatgttacaagggtgttattttagtggtgta |
9115149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 3596508 - 3596585
Alignment:
| Q |
245 |
tccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttatgataaaaaa |
322 |
Q |
| |
|
||||||||||||| | ||||||||| | ||||||||| |||||||||| |||||||| ||| | ||||||||||| |
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|
| T |
3596508 |
tccaacttacaccgcttcaatataagtcgttgatatattttaaatttattctaacggacgagatttcatgataaaaaa |
3596585 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 211 - 352
Target Start/End: Original strand, 35661446 - 35661586
Alignment:
| Q |
211 |
ggcaaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatct |
310 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
35661446 |
ggcaaagtatagtttggaccaccaaatacattgctccaacttacaccacc-caatataagccattgatatattataaatttattttaacggtccggatct |
35661544 |
T |
|
| Q |
311 |
tatgataaaaaagatgttacaaactgttattttagtggtgta |
352 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
35661545 |
tatgataaagaagctgttacaaggtgttattttagtggtgta |
35661586 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 14529624 - 14529588
Alignment:
| Q |
285 |
taaatttattttaacggaccggatcttatgataaaaa |
321 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
14529624 |
taaatttattttaacggatcggatctcatgataaaaa |
14529588 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 38948632 - 38948712
Alignment:
| Q |
220 |
tagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacg |
300 |
Q |
| |
|
||||||||| |||||||| |||| || ||||||||| || | |||||| ||||||||||| |||||||||||||||| |
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|
| T |
38948632 |
tagtttggatcatcaaatacattgctctaacttacactactttgatataagtcattgatatattttaaatttattttaacg |
38948712 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 211 - 352
Target Start/End: Complemental strand, 46170574 - 46170433
Alignment:
| Q |
211 |
ggcaaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatct |
310 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| ||||||||||| || |||||||||||||||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
46170574 |
ggcaaagtatagtttggactatcaaatacattgctccaacttacatcatttcaatataaaccattgatatattataaatttattttaacgaacgagatct |
46170475 |
T |
|
| Q |
311 |
tatgataaaaaagatgttacaaactgttattttagtggtgta |
352 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46170474 |
tacgataaaaaagatgttacaacgtgttattttagtggtgta |
46170433 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 39019034 - 39018935
Alignment:
| Q |
223 |
tttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttatgataaaaaa |
322 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||||| | ||| |||| ||||||||||| ||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
39019034 |
tttggaccaccaaatacattggtccaacttacaccactttaatctaaatcattgatatattttaaatttattttaacagaccggatctcatgatgaaaaa |
39018935 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 213 - 352
Target Start/End: Complemental strand, 41703023 - 41702884
Alignment:
| Q |
213 |
caaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatctta |
312 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||| | |||||||| |
|
|
| T |
41703023 |
caaagtatagtttggaccactaaatacattgttccaacttacaccacctcaatataagccattgacatattataaatttattctaacgatctggatctta |
41702924 |
T |
|
| Q |
313 |
tgataaaaaagatgttacaaactgttattttagtggtgta |
352 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
41702923 |
tgataaaaaagctgttacaaggtgttattttagtggtgta |
41702884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 211 - 352
Target Start/End: Complemental strand, 4513780 - 4513640
Alignment:
| Q |
211 |
ggcaaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatct |
310 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||| |
|
|
| T |
4513780 |
ggcaaagtatagtttgaaccaccaaatacattgctccaacttacaccacctcaatataagtcattgatatattataaatttattctaacggtccggatct |
4513681 |
T |
|
| Q |
311 |
tatgataaaaaagatgttacaaactgttattttagtggtgta |
352 |
Q |
| |
|
|||||| ||||| | |||||| |||||||||||||||||| |
|
|
| T |
4513680 |
tatgat-gaaaagctattacaaggtgttattttagtggtgta |
4513640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 352
Target Start/End: Original strand, 23613137 - 23613271
Alignment:
| Q |
214 |
aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttat |
313 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||| ||| ||||||| |||| |||| |||||||| |
|
|
| T |
23613137 |
aaagtatagtttggaccaccaaatagattgctccaacttacaccacctcaatataagtcattgatgtat----tatttattctaacagacccgatcttat |
23613232 |
T |
|
| Q |
314 |
gataaaaaagatgttacaaactgttattttagtggtgta |
352 |
Q |
| |
|
||| |||||| |||||||| |||||||||| ||||||| |
|
|
| T |
23613233 |
gatgaaaaagttgttacaaggtgttattttaatggtgta |
23613271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 343
Target Start/End: Complemental strand, 19505007 - 19504878
Alignment:
| Q |
214 |
aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttat |
313 |
Q |
| |
|
||||| |||||| |||| ||||| |||| |||||||||||||| | ||||||| ||||||||||| |||||||||||| ||||| | |||||||| |
|
|
| T |
19505007 |
aaagtttagtttaaaccaccaaatacattgctccaacttacaccattttaatataagtcattgatatattttaaatttattttcacggatcagatcttat |
19504908 |
T |
|
| Q |
314 |
gataaaaaagatgttacaaactgttatttt |
343 |
Q |
| |
|
||| |||||| || |||||| |||||||| |
|
|
| T |
19504907 |
gatgaaaaagctgctacaaagggttatttt |
19504878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 214 - 352
Target Start/End: Original strand, 10040449 - 10040587
Alignment:
| Q |
214 |
aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttat |
313 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||||||||||||||||||| |||| ||||||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
10040449 |
aaagtatagtttggaccaccaaatagattgctccaacttacaccacctcaaaataagtcattgatatattattaatttattctaacggaccggatcttat |
10040548 |
T |
|
| Q |
314 |
gataaaaaagatgttacaaactgttattttagtggtgta |
352 |
Q |
| |
|
||| |||||| |||||||| |||||||||||||||||| |
|
|
| T |
10040549 |
gatgaaaaagttgttacaaggtgttattttagtggtgta |
10040587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 35019111 - 35019020
Alignment:
| Q |
261 |
tcaatataaaccattgatatatcataaatttattttaacggaccggatcttatgataaaaaagatgttacaaactgttattttagtggtgta |
352 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||| |||||| || |||||| ||||||||||||||||| |
|
|
| T |
35019111 |
tcaatataagccattgatatattttaaatttattctaacggatcggatcttatgatgaaaaagctgctacaaagggttattttagtggtgta |
35019020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 34392123 - 34392225
Alignment:
| Q |
214 |
aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttat |
313 |
Q |
| |
|
||||| |||||||||||| ||||| ||||| || |||||||||||| ||||||||| ||||||||||| |||||||||| |||||||| |||||| || |
|
|
| T |
34392123 |
aaagtttagtttggaccaccaaatatattgctctaacttacaccacttcaatataagtcattgatatattttaaatttattgtaacggactggatctcat |
34392222 |
T |
|
| Q |
314 |
gat |
316 |
Q |
| |
|
||| |
|
|
| T |
34392223 |
gat |
34392225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 34480973 - 34480872
Alignment:
| Q |
214 |
aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttat |
313 |
Q |
| |
|
||||| |||||||||| ||||||| ||| |||||||||||||||| ||||||||| |||| |||||| |||||||||| |||||||| |||||| || |
|
|
| T |
34480973 |
aaagtttagtttggactatcaaatacattcttccaacttacaccacttcaatataagtcatttatatat-ttaaatttattctaacggactggatctcat |
34480875 |
T |
|
| Q |
314 |
gat |
316 |
Q |
| |
|
||| |
|
|
| T |
34480874 |
gat |
34480872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 211 - 352
Target Start/End: Original strand, 42943512 - 42943653
Alignment:
| Q |
211 |
ggcaaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatct |
310 |
Q |
| |
|
||||||||||||||||||| | ||||| | || ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| ||| | |
|
|
| T |
42943512 |
ggcaaagtatagtttggacgaccaaatacaatgctccaacttacaccacctcaatataagccattaatatattataaatttattttaacggaccagattt |
42943611 |
T |
|
| Q |
311 |
tatgataaaaaagatgttacaaactgttattttagtggtgta |
352 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
42943612 |
tatgatgaaaaagttgttacagggtgttattttagtggtgta |
42943653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 29525541 - 29525622
Alignment:
| Q |
214 |
aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattt |
295 |
Q |
| |
|
||||||||||||| |||||||||| |||| ||||| |||||| ||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
29525541 |
aaagtatagtttgaaccatcaaatacattgctccaatttacactacctcaatataaatcattgatatatgataaatttattt |
29525622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 29525908 - 29525972
Alignment:
| Q |
287 |
aatttattttaacggaccggatcttatgataaaaaagatgttacaaactgttattttagtggtgta |
352 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||||| |||||||| |||||||||||||||||| |
|
|
| T |
29525908 |
aatttattttaacggatcagatcttatgatgaaaaag-tgttacaaggtgttattttagtggtgta |
29525972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 298
Target Start/End: Complemental strand, 30308078 - 30307994
Alignment:
| Q |
214 |
aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaa |
298 |
Q |
| |
|
||||| |||||||||||||||||| ||| || ||| |||||| | ||||||||| |||| |||||| |||||||||||||| |
|
|
| T |
30308078 |
aaagtttagtttggaccatcaaatacattatttcaatttacactatttcaatataagtcatttatatattttaaatttattttaa |
30307994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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