View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_46 (Length: 349)
Name: NF1262_low_46
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 6 - 320
Target Start/End: Complemental strand, 49065456 - 49065142
Alignment:
| Q |
6 |
agcaccacagagtggtagtagagatgccatatttgcataacggtggtgaagatgattatgaagaaatgaggttgttcctgttgctgagaacatcgtcctc |
105 |
Q |
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| T |
49065456 |
agcaccatagagtggtagtagagatgccatatttgcataacggtggtgaagatgattatgaagaaatgaggttgttcctgttgctgagaacatcgtcctc |
49065357 |
T |
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| Q |
106 |
cgtcctctttttgcaattgacctctctctcttgtgagcattttgatgtcccccaagtgcttgtgaactgaagaattttctcttgcagtagttgcaagtga |
205 |
Q |
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| T |
49065356 |
cgtcctctttttgcaattgacctctctctcttgtgagcattttgatgtcccccaagtgcttgtgaactgaagaattttctcttgcagtagttgcaagtga |
49065257 |
T |
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| Q |
206 |
aaaaacgtggctctgaagttgattcagagccacaagtgaaattttctgaggatgttttagaagaattatctatgtccaaacatgtaactaaatttgactt |
305 |
Q |
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| T |
49065256 |
aaaaacgtggctctgaagttgattcagagccacaagtgaaattttctgaggatgttttagaagaattatctatgtccaaacatgtaactaaatttgacat |
49065157 |
T |
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| Q |
306 |
tgaattgcacccaag |
320 |
Q |
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| T |
49065156 |
tgaattgcacccaag |
49065142 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 2867116 - 2867194
Alignment:
| Q |
107 |
gtcctctttttgcaattgacctctctctcttgtgagcattttgatgtcccccaagtgcttgtgaactgaagaattttct |
185 |
Q |
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| T |
2867116 |
gtcctctttttgctattgatctctctcttttgtgagcattttggtgtccacctaatgcttgtgagctatagaattttct |
2867194 |
T |
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