View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_47 (Length: 349)
Name: NF1262_low_47
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 29 - 333
Target Start/End: Complemental strand, 4314899 - 4314595
Alignment:
| Q |
29 |
acaaccatgacaatataaagcaaaaatttgatgttcaagcatgggcatgtgtttctgatcatttcaatgaattcaaggttacaatggcaatcatggaggc |
128 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
4314899 |
acaaccatgacaatataaagcaaaaatttgatgttcaagcatgggcatgtgtttctgatcatttcaatgaactcaaggttacaaaggcaatcatggaggc |
4314800 |
T |
|
| Q |
129 |
aattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314799 |
aattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgat |
4314700 |
T |
|
| Q |
229 |
gtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaag |
328 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314699 |
gtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaag |
4314600 |
T |
|
| Q |
329 |
ttgct |
333 |
Q |
| |
|
||||| |
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|
| T |
4314599 |
ttgct |
4314595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 339
Target Start/End: Complemental strand, 4306037 - 4305727
Alignment:
| Q |
29 |
acaaccatgacaatataaagcaaaaatttgatgttcaagcatgggcatgtgtttctgatcatttcaatgaattcaaggttacaatggcaatcatggaggc |
128 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||||||||| |
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|
| T |
4306037 |
acaacaatgacaatataaagcaaaattttgatgtgcaagcatgggcttgtgtttccgaccatttcgatgaattcaaagttacaaaggcaatcatggaggc |
4305938 |
T |
|
| Q |
129 |
aattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgat |
228 |
Q |
| |
|
| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4305937 |
agttactagaagtgcttgtaatataaataatatagagttgcttcatctagatttgaaggaaaaactggccggaaagaagttcttaattgttttggatgac |
4305838 |
T |
|
| Q |
229 |
gtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaag |
328 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || |||||||| |||||||| | | || |||||||||||||||||||||||||| | |||||||| |
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| T |
4305837 |
gtttggactgaggattatgatgcttggaaatcccttttaaggcctcttcagtacagtgacaaaggaagtaaaattcttgtaacaacccgtattaaaaaag |
4305738 |
T |
|
| Q |
329 |
ttgctcctatg |
339 |
Q |
| |
|
||||| ||||| |
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|
| T |
4305737 |
ttgcttctatg |
4305727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 29 - 339
Target Start/End: Original strand, 4253586 - 4253896
Alignment:
| Q |
29 |
acaaccatgacaatataaagcaaaaatttgatgttcaagcatgggcatgtgtttctgatcatttcaatgaattcaaggttacaatggcaatcatggaggc |
128 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||||||| |||| || ||||||||| ||||||| || ||||||| ||| || ||||| | |
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|
| T |
4253586 |
acaaccatgacagtataaagcagaagtttgatgttcaagcatgggcttgtgcctcggatcatttcgatgaatttaatgttacaaaggccatattggagtc |
4253685 |
T |
|
| Q |
129 |
aattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgat |
228 |
Q |
| |
|
|||| | | ||| ||| ||||| | | ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
4253686 |
tgttacagggaatgcttgtagcataaacagcaacgagttgcttcatcgtgatttgaaggaaaaactgactggaaaaaagttcttaattgttttggatgat |
4253785 |
T |
|
| Q |
229 |
gtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaag |
328 |
Q |
| |
|
|| |||||||||||||||||| |||||||| |||||||| |||||||| | || | | ||||| |||||||||||||||||| || | | |||||| |
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|
| T |
4253786 |
gtatggaccgaggattatgacagctggaattctcttttaaggcctcttcaatacggggctaagggaaataaaattcttgtaacaactcgtattgaaaaag |
4253885 |
T |
|
| Q |
329 |
ttgctcctatg |
339 |
Q |
| |
|
||||| ||||| |
|
|
| T |
4253886 |
ttgcttctatg |
4253896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 42 - 339
Target Start/End: Original strand, 4246481 - 4246778
Alignment:
| Q |
42 |
tataaagcaaaaatttgatgttcaagcatgggcatgtgtttctgatcatttcaatgaattcaaggttacaatggcaatcatggaggcaattactagaagt |
141 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| ||||| |||||| |||| |||| || ||||||||| ||| || ||||| || |||| ||| |
|
|
| T |
4246481 |
tatacagcagaaatttgatgttcaagcatgggtttgtgtctctgatgattttgatgacttgaaggttacataggctatattggagtcagttacacagagt |
4246580 |
T |
|
| Q |
142 |
gcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgagg |
241 |
Q |
| |
|
| ||| | |||||||| | |||||| |||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||| | ||| |
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|
| T |
4246581 |
tcttgtaacataaataacaaagagttacttcattgtgatttgaaggaaaaactgactggaaaaaagttcttgattgttttggacgatgtttggatcaagg |
4246680 |
T |
|
| Q |
242 |
attatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgctcctatg |
339 |
Q |
| |
|
||||| || ||||||||| ||| | | |||||||| | || | | |||||| ||||||||||||||||| || ||| | ||||||||| ||||| |
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|
| T |
4246681 |
attataacagttggaattctcttatgatgcctcttcaatacggagctaagggaagcaaaattcttgtaacaacgcgtagtgataaagttgcttctatg |
4246778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 29 - 339
Target Start/End: Original strand, 41933030 - 41933340
Alignment:
| Q |
29 |
acaaccatgacaatataaagcaaaaatttgatgttcaagcatgggcatgtgtttctgatcatttcaatgaattcaaggttacaatggcaatcatggaggc |
128 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
41933030 |
acaaccatgacaatataaagcaaaagtttgatgttcaagcatgggcttgtgtttctgaccatttcgatgaattcaaggttacaaaggcaatcatggaggc |
41933129 |
T |
|
| Q |
129 |
aattactagaagtgcatgtcatataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgat |
228 |
Q |
| |
|
| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |
|
|
| T |
41933130 |
agttactagaagtgcttgtaatataaataatatagagttgcttcatctagatttgaaggaaaaactgtccggaaagaagttcttaattgttttagatgat |
41933229 |
T |
|
| Q |
229 |
gtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaag |
328 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| |||||||| |||||||| |||| |||| |||||||||||||||||||||||||| | |||||||| |
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|
| T |
41933230 |
ttctggaccgaggattatgatgcttggaattctcttttaaggcctcttcaatatggtaccaagggaagtaaaattcttgtaacaacccatattaaaaaag |
41933329 |
T |
|
| Q |
329 |
ttgctcctatg |
339 |
Q |
| |
|
||||| ||||| |
|
|
| T |
41933330 |
ttgcttctatg |
41933340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 315
Target Start/End: Complemental strand, 34802834 - 34802689
Alignment:
| Q |
170 |
ttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaag |
269 |
Q |
| |
|
|||||| |||||||||||| || |||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||| ||| |||| |
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|
| T |
34802834 |
ttcatcaagatttgaaggagaagttggcgggaaagaagttcttaattgtattggatgatgtctggactgaggattatgacagttggaatattcttataag |
34802735 |
T |
|
| Q |
270 |
acctcttcatgatggcaccaggggaagtaaaattcttgtaacaacc |
315 |
Q |
| |
|
||| |||| || || | |||||||||||||||||||||||| |
|
|
| T |
34802734 |
gccttttcaatgcggaactaaaggaagtaaaattcttgtaacaacc |
34802689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 34802936 - 34802876
Alignment:
| Q |
33 |
ccatgacaatataaagcaaaaatttgatgttcaagcatgggcatgtgtttctgatcatttc |
93 |
Q |
| |
|
|||||||| ||||||| | ||||| | |||||||||||||| |||||| ||||||||||| |
|
|
| T |
34802936 |
ccatgacagtataaagaagaaattcggtgttcaagcatgggtttgtgttactgatcatttc |
34802876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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