View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_49 (Length: 336)
Name: NF1262_low_49
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_49 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 104 - 308
Target Start/End: Original strand, 127896 - 128101
Alignment:
| Q |
104 |
cctttattcctcactatcccttcattccctcttcacaactagacaaaattgtccactgcatctc-aactggtaattaagctaagatttcaaaacacaaga |
202 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |
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| T |
127896 |
cctttattcctcactatcccttcatttcctcttcacaactagacaaaattgtccactgcatctctaactagtaattaagctatgatttcaaaacacaaga |
127995 |
T |
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| Q |
203 |
gttgaagtcgaattaagtcgatattcttctgccttaagctgcaattgttattgtcataataaaactacatgtgaatcaattagaattaagaagcttatca |
302 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
127996 |
gttgaagtcgaattaagttgatattcttcggccttaagctgcaattgttattgtcataataaaactacaagtgaatcaattagaattaagaagcttatca |
128095 |
T |
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| Q |
303 |
atcaga |
308 |
Q |
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|||||| |
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| T |
128096 |
atcaga |
128101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 121 - 308
Target Start/End: Complemental strand, 19074043 - 19073855
Alignment:
| Q |
121 |
cccttcattccctcttcacaactagacaaaattgtccactgcatctc-aactggtaattaagctaagatttcaaaacacaagagttgaagtcgaattaag |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19074043 |
cccttcattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaagctaagatttcaaaacacaagagttgaagtcgaattaag |
19073944 |
T |
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| Q |
220 |
tcgatattcttctgccttaagctgcaattgttattgtcataataaaactacatgtgaatcaattagaattaagaagcttatcaatcaga |
308 |
Q |
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| T |
19073943 |
tcgatattcttcggccttaagctgcaattgttattgtcataataaaactacatgtgaatcaattagaattaagaagcttatcaatcaga |
19073855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 121 - 308
Target Start/End: Complemental strand, 19121933 - 19121745
Alignment:
| Q |
121 |
cccttcattccctcttcacaactagacaaaattgtccactgcatctc-aactggtaattaagctaagatttcaaaacacaagagttgaagtcgaattaag |
219 |
Q |
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| T |
19121933 |
cccttcattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaagctaagatttcaaaacacaagagttgaagtcgaattaag |
19121834 |
T |
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| Q |
220 |
tcgatattcttctgccttaagctgcaattgttattgtcataataaaactacatgtgaatcaattagaattaagaagcttatcaatcaga |
308 |
Q |
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| T |
19121833 |
tcgatattcttcggccttaagctgcaattgttattgtcataataaaactacatgtgaatcaattagaattaagaagcttatcaatcaga |
19121745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 51795912 - 51795955
Alignment:
| Q |
177 |
ttaagctaagatttcaaaacacaagagttgaagtcgaattaagt |
220 |
Q |
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| T |
51795912 |
ttaaactaagatttttaaacacaagagttgaagtcgaattaagt |
51795955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 121 - 267
Target Start/End: Original strand, 21517135 - 21517284
Alignment:
| Q |
121 |
cccttcattccctcttcacaactagacaaaattgtccactgcatctc-aactggtaattaagctaagatttcaaaacacaagagttgaagtcgaattaag |
219 |
Q |
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| T |
21517135 |
cccttcattccctcttcacaactagacaaaattgtccactgcatctctaactactaattaagttaagatttcaaaacacaagagttgaagtcgaattaag |
21517234 |
T |
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| Q |
220 |
tc--gatattcttctgccttaagctgcaattgttattgtcataataaaac |
267 |
Q |
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| T |
21517235 |
tcaatatattctttggccttaagctgcaattgttattgtcataaaaaaac |
21517284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 121 - 253
Target Start/End: Original strand, 21795876 - 21796009
Alignment:
| Q |
121 |
cccttcattccctcttcacaactagacaaaattgtccactgcatctc-aactggtaattaagctaagatttcaaaacacaagagttgaagtcgaattaag |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||| |||||||| |
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| T |
21795876 |
cccttcattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaagttatgatttcaaaacacaagagttgaagtggaattaag |
21795975 |
T |
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| Q |
220 |
tcgatattcttctgccttaagctgcaattgttat |
253 |
Q |
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| T |
21795976 |
tcgatattcttcaacgttaagctgcaattgttat |
21796009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 21800468 - 21800523
Alignment:
| Q |
253 |
ttgtcataataaaactacatgtgaatcaattagaattaagaagcttatcaatcaga |
308 |
Q |
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| T |
21800468 |
ttgtcataataaaactacatgtgaatcaactagaattaagaagcttatcaatcaga |
21800523 |
T |
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