View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_low_5 (Length: 720)
Name: NF1262_low_5
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 22 - 525
Target Start/End: Original strand, 4564623 - 4565133
Alignment:
| Q |
22 |
agagagatctaggaagggttaaaagaatcaaattccttaataaagaaacaagagaaagaaggttaagtgaaagttgtgtatgtgaatgtgtgggtcatat |
121 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4564623 |
agagagatataggaagggttaaaagaatcaaattccttaataaagaaacaagagaaagaaggttaagtgaaagttgtgtatgtgaatgtgtgggtcatat |
4564722 |
T |
|
| Q |
122 |
atggtcatttccttcctaccacttccatgtgaacgtggggtgggtcctgttgcttcaacctctcttctttagcatgtggattttgtcagagggaaaaaac |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4564723 |
atggtcatttccttcctaccacttccatgtgaacgtggggtgggtcctgttgcttcaacctctcttctttagcatgtggattttgtcagagggaaaaaac |
4564822 |
T |
|
| Q |
222 |
ttaaacaggtggagaagtggatttgtatactcattacccaatagaaaagaaaattaaataagaaa-------aagtggatatagatagagagatattcgg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4564823 |
ttaaacaggtggagaagtggatttgtatactcattacccaatagaaaagaaaattgaataagaaaattacccaagtggatatagatagagagatattcgg |
4564922 |
T |
|
| Q |
315 |
tttaaagctgcaggatcaaatgcacatgatcaaatattctcatacatatctcactttctcagaattgcactttgatgggttctcacttttcctcccatac |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4564923 |
tttaaagctgcaggatcaaatgcacatgatcaaatattctcatacatatctcactttctcagaattgcactttgatgggttctcacttttcctcccatac |
4565022 |
T |
|
| Q |
415 |
ttgggtatttttgatatatagatataaattgtgagatttgcaaccactattgtgggtgcattataaggattattcatgcatggtttctattacatgggag |
514 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4565023 |
ttgggtacttttgatatatagatctaaattgtgagatttgcaaccactattgtgggtgcattataaggattattcatgcatggtttctattacatgagag |
4565122 |
T |
|
| Q |
515 |
agtcttttgac |
525 |
Q |
| |
|
||||||||||| |
|
|
| T |
4565123 |
agtcttttgac |
4565133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 585 - 649
Target Start/End: Original strand, 4565193 - 4565261
Alignment:
| Q |
585 |
cgttctttaagagttaaagtttataatgagtttcacttt----gcattgatttgatgatagtcatttat |
649 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
4565193 |
cgttatttaagagttgaagtttacaatgagtttcactttatcggcattgatttgatgatagttatttat |
4565261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University