View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_51 (Length: 331)
Name: NF1262_low_51
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 50416739 - 50416861
Alignment:
| Q |
137 |
aacaatggccatcaccaacgaaagaataaggatcaccagaaatgaaaaagaataactctgcgaatgnnnnnnnnntagttaagttagatgctagctttct |
236 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
50416739 |
aacaatgcccatcaccaacgaaagaataaggatcaccagaaatgaaaaagaataactctgcgaaggaaaaaaaaatagttaagttagatgctagctttca |
50416838 |
T |
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| Q |
237 |
catcaatatatcactagaataat |
259 |
Q |
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|||||||||| ||||| |||||| |
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| T |
50416839 |
catcaatataacactaaaataat |
50416861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 50416656 - 50416711
Alignment:
| Q |
87 |
gaaccgactcctttaagaacacccacaatcattgtagttaaagcagaattaacaat |
142 |
Q |
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| T |
50416656 |
gaaccaactcctttaagaacacccacaatcgttgtagttaaagcagaattaacaat |
50416711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 259
Target Start/End: Complemental strand, 39953004 - 39952880
Alignment:
| Q |
137 |
aacaatggccatcaccaacgaaagaataaggatcaccagaaatgaaaaagaataactctgcgaatg--nnnnnnnnntagttaagttagatgctagcttt |
234 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39953004 |
aacaatggccatcaccaacgaatgaataaggatcaccacaaatgaaaaagaataactctgcgaatgaaaaaaaaaaatagttaagttagatgctagcttt |
39952905 |
T |
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| Q |
235 |
ctcatcaatatatcactagaataat |
259 |
Q |
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| T |
39952904 |
cacatcaatatatcactaaaataat |
39952880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 39953088 - 39953032
Alignment:
| Q |
86 |
agaaccgactcctttaagaacacccacaatcattgtagttaaagcagaattaacaat |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39953088 |
agaaccgactcctttaagaacacccacaatcattgtagttaaagcagaattaacaat |
39953032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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