View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262_low_58 (Length: 311)

Name: NF1262_low_58
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262_low_58
NF1262_low_58
[»] chr6 (10 HSPs)
chr6 (13-254)||(7199869-7200110)
chr6 (16-245)||(34305076-34305306)
chr6 (16-228)||(10402325-10402537)
chr6 (16-228)||(32120524-32120736)
chr6 (134-219)||(45106-45192)
chr6 (27-250)||(8374606-8374831)
chr6 (126-228)||(29337493-29337597)
chr6 (73-228)||(32116231-32116386)
chr6 (142-242)||(22986501-22986602)
chr6 (142-242)||(23801792-23801893)
[»] chr3 (4 HSPs)
chr3 (19-215)||(29862407-29862607)
chr3 (73-225)||(49018551-49018704)
chr3 (134-221)||(43123754-43123842)
chr3 (139-201)||(53786326-53786389)
[»] chr4 (3 HSPs)
chr4 (16-229)||(23808997-23809211)
chr4 (16-229)||(53171093-53171307)
chr4 (16-228)||(56461413-56461625)
[»] chr5 (4 HSPs)
chr5 (44-228)||(15291349-15291534)
chr5 (110-228)||(27337289-27337408)
chr5 (13-235)||(433881-434105)
chr5 (73-209)||(6821559-6821696)
[»] chr2 (9 HSPs)
chr2 (16-228)||(9684712-9684926)
chr2 (73-228)||(18744373-18744529)
chr2 (113-228)||(28225595-28225711)
chr2 (134-225)||(17345237-17345329)
chr2 (110-221)||(20142137-20142249)
chr2 (134-218)||(34185475-34185560)
chr2 (136-219)||(8588690-8588774)
chr2 (135-219)||(41867325-41867410)
chr2 (134-228)||(19161243-19161337)
[»] scaffold0186 (1 HSPs)
scaffold0186 (16-228)||(20321-20534)
[»] chr8 (8 HSPs)
chr8 (16-125)||(4700340-4700449)
chr8 (16-216)||(24125635-24125836)
chr8 (73-225)||(25021157-25021310)
chr8 (16-228)||(37517685-37517898)
chr8 (145-235)||(139891-139982)
chr8 (134-208)||(500843-500918)
chr8 (187-230)||(36006093-36006136)
chr8 (110-251)||(40840126-40840268)
[»] chr7 (5 HSPs)
chr7 (110-228)||(19277765-19277884)
chr7 (135-228)||(47679717-47679811)
chr7 (73-228)||(5827850-5828006)
chr7 (134-251)||(4175753-4175869)
chr7 (171-228)||(32585743-32585800)
[»] chr1 (6 HSPs)
chr1 (73-228)||(28040483-28040638)
chr1 (73-225)||(19036026-19036178)
chr1 (52-162)||(7435009-7435119)
chr1 (134-228)||(38732179-38732274)
chr1 (135-235)||(36154680-36154781)
chr1 (133-219)||(37200860-37200945)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 7199869 - 7200110
Alignment:
Q  13 aatatcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtag 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  ||    
T  7199869 aatatcatattttaagagaaagtgagatgagtggtatgaactctgatttagacaatgtcatggatggtctttgtggtgcgattctagattgtcactaaag 7199968  T
Q  113 cagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgcttttttagtaaaattgatcaagatatggaagtgaagtttgata 212  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7199969 tagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgcttttttagtaaaattgatcaagatatggaagtgaagtttgata 7200068  T
Q  213 tgaccacaagacagaaagtagttcttgggtgttggcaagaag 254  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7200069 tgaccacaagacagaaagtagttcttgggtgttggcaagaag 7200110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 34305306 - 34305076
Alignment:
Q  16 atcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcag 115  Q
    |||||||||| ||||| ||||||||  |||||||| |||| ||||| || ||||   ||||||||||||  |||||||||  ||||| | ||  || |||    
T  34305306 atcatattttgagagacagtgggatatgtggtatggactcagattttgataatgctttggatggtcttcacggtgcgattccagattttgacgttaacag 34305207  T
Q  116 ttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatg 214  Q
    ||||| | | ||||||  ||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||||| |||||||| |||    
T  34305206 ttttacttgcaaggacaccgtccctcctaaagcacaacatgttttggcgagtgctctttttagtaaaattgttcaagatatggaagttaagtttgacatg 34305107  T
Q  215 accacaagacagaaagtagttcttgggtgtt 245  Q
    ||| |||||||||| | |||| |||| ||||    
T  34305106 accgcaagacagaaggaagtttttggatgtt 34305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 10402537 - 10402325
Alignment:
Q  16 atcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcag 115  Q
    |||||||||| ||||| ||||||||  |||||||| |||| ||||| || ||||   ||||||||||| | | | |||||   |||| | ||  ||||||    
T  10402537 atcatattttgagagatagtgggatatgtggtatggactcggattttgataatgctttggatggtctttgcgatacgattcctgattttgacgttagcag 10402438  T
Q  116 ttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatg 214  Q
    ||||| | |||||||| |||||||||||||||||||||||||||||  || |||| |||||||| |||| | ||||||||||||||| |||||||| |||    
T  10402437 ttttacttgtaaggacatcgtccctcctaaagcacaacatgttttgacgagtgctctttttagt-aaatcgttcaagatatggaagttaagtttgacatg 10402339  T
Q  215 accacaagacagaa 228  Q
    ||||| ||||||||    
T  10402338 accactagacagaa 10402325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 32120736 - 32120524
Alignment:
Q  16 atcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcag 115  Q
    |||||||||| ||||| |||| |||  |||| |||||||| ||||| || ||||   |||||||||||| |||| |||||  ||||| | ||  |||||     
T  32120736 atcatattttgagagatagtgtgatatgtggcatgaactcggattttgataatgctttggatggtcttcatggtacgattccagatt-tgacgttagcaa 32120638  T
Q  116 ttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatg 214  Q
    ||||| | |  | |||  ||||||||||||||||||||||||||||| || |||| |||||||  ||| || ||||||||||||||| |||||||| |||    
T  32120637 ttttacttgcgaagacaacgtccctcctaaagcacaacatgttttggcgagtgctctttttaggtaaagtgttcaagatatggaagttaagtttgacatg 32120538  T
Q  215 accacaagacagaa 228  Q
    ||||||||||||||    
T  32120537 accacaagacagaa 32120524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 45106 - 45192
Alignment:
Q  134 cgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccac 219  Q
    ||||||||||||||||||||||||||||| || |||| |||||||||||| || |||  |||||||||| |||||||| ||||||||    
T  45106 cgtccctcctaaagcacaacatgttttggcgagtgctctttttagtaaaagtgttcagaatatggaagttaagtttgacatgaccac 45192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 8374606 - 8374831
Alignment:
Q  27 agagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagta 126  Q
    ||||| || ||||| ||||||||||||| |||||| |||  ||   | |||||||||  |||| ||||| || ||| | ||| ||||| ||||| ||| |    
T  8374606 agagatagcgggataagtggtatgaactttgattttgaccgtgcttttgatggtctttatggtacgattttaaattttgactttagcaattttactagca 8374705  T
Q  127 aggacttcgtccctc--ctaaagcacaacatgttttggtgaatgcttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagac 224  Q
    |||||  | ||||||   ||||||||| ||| ||||| |||| |  |||||||||||| || ||| |||||||||||||| ||||| ||||||||  |||    
T  8374706 aggacaccatccctcatataaagcacatcatattttgatgaacgtctttttagtaaaagtgttcaggatatggaagtgaaatttgacatgaccacgcgac 8374805  T
Q  225 agaaagtagttcttgggtgttggcaa 250  Q
    ||||||||||| || |||||| ||||    
T  8374806 agaaagtagtttttcggtgtttgcaa 8374831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 29337493 - 29337597
Alignment:
Q  126 aaggacttcgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaat-tgatcaagatatggaagtgaagtttgatatgaccacaaga 223  Q
    |||||| |||||| |||||||||||||||| ||||||||| || | |||||||||||||   |||||||||||||||| |||||||| |||||| | |||    
T  29337493 aaggacatcgtccatcctaaagcacaacatattttggtgagtgccctttttagtaaaataaaatcaagatatggaagttaagtttgacatgacctctaga 29337592  T
Q  224 cagaa 228  Q
    |||||    
T  29337593 cagaa 29337597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 228
Target Start/End: Complemental strand, 32116386 - 32116231
Alignment:
Q  73 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 171  Q
    |||||| |||||||||| |||||  ||||| | ||  ||||||||||| ||| || |||  ||||| ||||||||||||||||||||||  || || | |    
T  32116386 tggatgatcttcgtggtacgattccagatt-tgacgttagcagttttactagcaaagacaacgtccttcctaaagcacaacatgttttgacgagtgatct 32116288  T
Q  172 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 228  Q
    ||||||||||| || ||||||||||||||| |||||||| |  ||||| ||||||||    
T  32116287 ttttagtaaaagtgttcaagatatggaagttaagtttgacacaaccacgagacagaa 32116231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 22986602 - 22986501
Alignment:
Q  142 ctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgg 240  Q
    ||||||||||| ||||||||| |  || |||||||||||||| || | |||||| | ||||||||||||| ||| |||||||| |||||| |||| ||||    
T  22986602 ctaaagcacaatatgttttggcgtgtgtcttttttagtaaaagtgttaaagataagaaagtgaagtttgacatgtccacaagaaagaaagcagtttttgg 22986503  T
Q  241 gt 242  Q
    ||    
T  22986502 gt 22986501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 23801792 - 23801893
Alignment:
Q  142 ctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgg 240  Q
    ||||||||||| ||||||||| |  || |||||||||||||| || | |||||| | ||||||||||||| ||| |||||||| |||||| |||| ||||    
T  23801792 ctaaagcacaatatgttttggcgtgtgtcttttttagtaaaagtgttaaagataagaaagtgaagtttgacatgtccacaagaaagaaagcagtttttgg 23801891  T
Q  241 gt 242  Q
    ||    
T  23801892 gt 23801893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 29862607 - 29862407
Alignment:
Q  19 atattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcagttt 118  Q
    ||||||| ||||| ||||||||| |||||||  |||| ||||| || ||||   ||||||||||||||||| ||||| |||||| |  |  ||| |||||    
T  29862607 atattttgagagacagtgggatgtgtggtatagactcggattttgataatgctttggatggtcttcgtggtacgattctagattttggcattagtagttt 29862508  T
Q  119 tagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgc----ttttttagtaaaattgatcaagatatggaagtgaagtttgatatg 214  Q
    || ||  |||||| ||||||||||||||||||||||||||||||  |||||    ||||||||||||| || ||||||||||||||| |||||||| |||    
T  29862507 tactaacaaggacatcgtccctcctaaagcacaacatgttttggccaatgctgttttttttagtaaaagtgttcaagatatggaagttaagtttgacatg 29862408  T
Q  215 a 215  Q
    |    
T  29862407 a 29862407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 49018704 - 49018551
Alignment:
Q  73 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 171  Q
    |||||||| |||||| | ||||| |||||| | ||  ||||||||||| ||| || ||| | ||| |||||||||||||||||||||||| || |||| |    
T  49018704 tggatggttttcgtgctacgattctagattttgacgttagcagttttactagcaaagacattgtctctcctaaagcacaacatgttttggcgagtgctct 49018605  T
Q  172 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagaca 225  Q
    ||||| ||||| |  |||||||||| |||| ||||||||  ||||||| |||||    
T  49018604 ttttaataaaagttttcaagatatgtaagttaagtttgacgtgaccacgagaca 49018551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 43123842 - 43123754
Alignment:
Q  134 cgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaa 221  Q
    |||||||||||||| ||||||||| ||||||| || |||||||| ||||| || |||| |||| ||| | |||||||| ||||||||||    
T  43123842 cgtccctcctaaagtacaacatgtattggtgagtgtcttttttaataaaagtgttcaacatattgaaataaagtttgacatgaccacaa 43123754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 53786389 - 53786326
Alignment:
Q  139 ctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagt 201  Q
    |||||||| ||||||||||||||| || |||| |||||||||||| || |||||| ||||||||    
T  53786389 ctcctaaaacacaacatgttttggcgagtgctctttttagtaaaagtgttcaagacatggaagt 53786326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 23808997 - 23809211
Alignment:
Q  16 atcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcag 115  Q
    ||||||| || ||||| ||||| || |||| |||| |||| |||||  ||| ||   |||||||||||||||||  |||| || ||| | ||| ||| ||    
T  23808997 atcatatattgagagacagtggaataagtgatatggactccgattttcacattgctttggatggtcttcgtggtatgattttaaattttgactttagtag 23809096  T
Q  116 ttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaat-gcttttttagtaaaattgatcaagatatggaagtgaagtttgatatg 214  Q
    ||||| ||||||||||  |||||||| ||||||||||||| ||||||||| | | ||||||||||||| || |||||||||||||||||| ||||| |||    
T  23809097 ttttactagtaaggacaccgtccctcataaagcacaacatattttggtgattggtttttttagtaaaaatgttcaagatatggaagtgaaatttgacatg 23809196  T
Q  215 accacaagacagaaa 229  Q
    |||| ||| ||||||    
T  23809197 accataaggcagaaa 23809211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 53171307 - 53171093
Alignment:
Q  16 atcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcag 115  Q
    |||||||||| ||||| |||||| |  |||| |||||||| ||||| || ||| |  ||||| |||||||||||||||||  ||||| | |   ||| ||    
T  53171307 atcatattttgagagacagtgggttatgtggcatgaactcggattttgataatattttggattgtcttcgtggtgcgatttcagattttgatgttagtag 53171208  T
Q  116 ttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatg 214  Q
    ||||| ||| || ||| |||||||||||||||||||||||||||||| || |||| |||||||||||| || |||| |||||||||| |||||||| ||     
T  53171207 ttttactagcaaagacatcgtccctcctaaagcacaacatgttttggcgagtgctctttttagtaaaagtgttcaaaatatggaagttaagtttgacata 53171108  T
Q  215 accacaagacagaaa 229  Q
    ||||| ||| |||||    
T  53171107 accacgagaaagaaa 53171093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 56461413 - 56461625
Alignment:
Q  16 atcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcag 115  Q
    |||||||||| ||||| ||||||||  |||||||| |||  |||||  | ||||   |||||| |||||||||| ||||| |||||| | ||  | ||||    
T  56461413 atcatattttgagagacagtgggatatgtggtatgcacttagattttaataatgctttggatg-tcttcgtggtacgattctagattttgacattggcag 56461511  T
Q  116 ttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgc--ttttttagtaaaattgatcaagatatggaagtgaagtttgatat 213  Q
    ||||| ||| |||||| | ||||||||||||||||||||| |||||| || |||  ||||||||||||| || ||||||||||||||| ||| || | ||    
T  56461512 ttttactagcaaggacattgtccctcctaaagcacaacatattttggcgagtgcttttttttagtaaaagtgttcaagatatggaagttaag-ttcacat 56461610  T
Q  214 gaccacaagacagaa 228  Q
    |||||| ||||||||    
T  56461611 gaccactagacagaa 56461625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 44 - 228
Target Start/End: Original strand, 15291349 - 15291534
Alignment:
Q  44 tggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcct 143  Q
    ||||||| |||| ||||| || |||||  ||||||||||||||||| | ||| |||||| | ||  ||||||||||| ||| || |||  ||||||||||    
T  15291349 tggtatggactcggatttcgataatgttttggatggtcttcgtggtacaattttagattttgacgttagcagttttactagcaaagacaccgtccctcct 15291448  T
Q  144 aaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 228  Q
    |||||  |||||||||||  || |||| |||||||||||| || ||||||||||||||| |||||||| |||||||| ||||||||    
T  15291449 aaagcggaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatggaagttaagtttgacatgaccacgagacagaa 15291534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 27337408 - 27337289
Alignment:
Q  110 tagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagttt 208  Q
    ||||||||||| | | ||||||  ||||||||||||||||||||||||||||| || |||| ||||||||||| ||| ||||||||||||||| ||||||    
T  27337408 tagcagttttacttgcaaggacaccgtccctcctaaagcacaacatgttttggcgagtgctctttttagtaaagttgttcaagatatggaagttaagttt 27337309  T
Q  209 gatatgaccacaagacagaa 228  Q
    || |||||||| ||||||||    
T  27337308 gacatgaccactagacagaa 27337289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 434105 - 433881
Alignment:
Q  13 aatatcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtag 112  Q
    ||||||||||||| ||||| ||||||||  |||||||  |||  ||||| || ||||   ||||||||||||  ||  |||||  ||||| | ||  |||    
T  434105 aatatcatattttgagagacagtgggatatgtggtattgacttggattttgataatgctttggatggtcttcacggaacgattccagattttgacgttag 434006  T
Q  113 cagttttagtagtaaggacttcgtccctcctaaagcacaacatgtttt-ggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttga 210  Q
    |||||||| | | ||||||  ||||||||||||||||||||||||||| ||||| | || ||||||||||| ||| ||||||||||||| | ||||||||    
T  434005 cagttttacttgcaaggacaccgtccctcctaaagcacaacatgtttttggtgagtcctctttttagtaaagttgttcaagatatggaacttaagtttga 433906  T
Q  211 tatgaccacaagacagaaagtagtt 235  Q
     |||||||| || ||||| ||||||    
T  433905 aatgaccactaggcagaaggtagtt 433881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 209
Target Start/End: Original strand, 6821559 - 6821696
Alignment:
Q  73 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 171  Q
    ||||||||||||||||| |||||  ||||| | ||  || |||||||| ||| || ||| ||||||||||||||  | || ||||||||| || |||| |    
T  6821559 tggatggtcttcgtggtacgattccagattttgacgttaacagttttactagcaaagacatcgtccctcctaaaatataaaatgttttggcgagtgctct 6821658  T
Q  172 ttttagtaaaattgatcaagatatggaagtgaagtttg 209  Q
    ||||||||||| || |||||||||| || |||||||||    
T  6821659 ttttagtaaaagtgttcaagatatgaaaatgaagtttg 6821696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 9684712 - 9684926
Alignment:
Q  16 atcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcag 115  Q
    |||||||||| ||||| |||||| |  |||| ||| ||||  |||| || ||||   |||||||||||||||||||||||  ||||| | |   |||||     
T  9684712 atcatattttgagagacagtgggttatgtggcatggactcgaattttgataatgctttggatggtcttcgtggtgcgattccagattttgatgttagcat 9684811  T
Q  116 ttttagt-agtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatat 213  Q
    ||||| | || || ||| ||||||||| ||||||||||||||||||||||| |||| |||||| ||||| || ||| ||||||||||| |||||||| ||    
T  9684812 ttttacttagcaaagacatcgtccctcttaaagcacaacatgttttggtgagtgctctttttaataaaagtgttcaggatatggaagttaagtttgacat 9684911  T
Q  214 gaccacaagacagaa 228  Q
    |||||| ||||||||    
T  9684912 gaccacgagacagaa 9684926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 73 - 228
Target Start/End: Original strand, 18744373 - 18744529
Alignment:
Q  73 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 171  Q
    ||||||||||||||||| | |||  ||||| | |   ||||||||||| ||| || |||  |||| |||||||||||||||||||||||| || |||| |    
T  18744373 tggatggtcttcgtggtacaattccagattttgatgttagcagttttactagcaaagacaccgtctctcctaaagcacaacatgttttggcgagtgctct 18744472  T
Q  172 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 228  Q
    ||||||||||| || ||| ||||||||||| |||||||| |||||||| ||||||||    
T  18744473 ttttagtaaaagtgttcaggatatggaagttaagtttgagatgaccacgagacagaa 18744529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 28225711 - 28225595
Alignment:
Q  113 cagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgat 211  Q
    |||||||| | | ||||||  |||||||||||||||||||||| |||||| || |||| ||||||||||||||| ||||||||||||||| | ||||||     
T  28225711 cagttttacttgcaaggacaccgtccctcctaaagcacaacatattttggcgagtgctctttttagtaaaattgttcaagatatggaagttatgtttgac 28225612  T
Q  212 atgaccacaagacagaa 228  Q
    |||||||| ||||||||    
T  28225611 atgaccactagacagaa 28225595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 17345329 - 17345237
Alignment:
Q  134 cgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagaca 225  Q
    |||||||||||||||||||| ||||||||||| |||| |||||||||||| || |||  |||||||||| |||||||| |||||||| |||||    
T  17345329 cgtccctcctaaagcacaacttgttttggtgagtgctctttttagtaaaagtgttcagcatatggaagttaagtttgacatgaccaccagaca 17345237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 20142137 - 20142249
Alignment:
Q  110 tagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagttt 208  Q
    ||||||||||| ||| || |||  |||| ||||||||||||||||||| |||| || |||| ||||||||||||  | ||| ||||||||||| ||||||    
T  20142137 tagcagttttactagcaaagacaccgtctctcctaaagcacaacatgtcttggcgagtgctctttttagtaaaagcgttcaggatatggaagttaagttt 20142236  T
Q  209 gatatgaccacaa 221  Q
    || ||||||||||    
T  20142237 gacatgaccacaa 20142249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 34185475 - 34185560
Alignment:
Q  134 cgtccctcctaaagcacaacatgttttggtgaatgc-ttttttagtaaaattgatcaagatatggaagtgaagtttgatatgacca 218  Q
    |||||| ||||||| | ||||| |||||| || ||| ||||||||||||| || |||||||||||||||||||||||| |||||||    
T  34185475 cgtcccacctaaagtagaacatattttggcgagtgccttttttagtaaaagtgttcaagatatggaagtgaagtttgagatgacca 34185560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 8588774 - 8588690
Alignment:
Q  136 tccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccac 219  Q
    ||||||| ||||||||||||||||||| || || | |||||| ||||| || ||||||||||||||| |||||||| ||||||||    
T  8588774 tccctccaaaagcacaacatgttttggcgagtgtcctttttaataaaagtgttcaagatatggaagtcaagtttgacatgaccac 8588690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 41867325 - 41867410
Alignment:
Q  135 gtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccac 219  Q
    |||||||||||| |||||||| |||||| || |||| |||||||||||| ||  || ||||||||||| |||||||| ||||||||    
T  41867325 gtccctcctaaaacacaacatattttggcgagtgctctttttagtaaaagtgtccaggatatggaagtcaagtttgacatgaccac 41867410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 19161243 - 19161337
Alignment:
Q  134 cgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 228  Q
    |||||||||||| ||||||||||||| ||  | |||| |||||  ||||| || ||||||||||||||| |||||||| |||| ||| ||||||||    
T  19161243 cgtccctcctaatgcacaacatgttt-ggcaagtgctctttttcataaaaatgttcaagatatggaagttaagtttgacatgatcacgagacagaa 19161337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 20534 - 20321
Alignment:
Q  16 atcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcag 115  Q
    |||||||||||||||| ||||| || ||| ||||| |||| ||||| || |||||  |  ||||||||||| |||| |||  ||||| | ||  || ||     
T  20534 atcatattttaagagacagtggaataagtagtatggactcagattttgataatgttttttatggtcttcgtagtgcaatttcagattttgacattaacaa 20435  T
Q  116 ttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatg 214  Q
    ||||| | | || |||| |||| |||||||||||||||||||||||| ||||| | |||||| ||||| || |||||||||| |||| |||||||| |||    
T  20434 ttttacttgcaaagactccgtctctcctaaagcacaacatgttttggcgaatgccctttttaataaaagtgttcaagatatgaaagttaagtttgacatg 20335  T
Q  215 accacaagacagaa 228  Q
    ||||| ||||||||    
T  20334 accactagacagaa 20321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 4700449 - 4700340
Alignment:
Q  16 atcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcag 115  Q
    |||||| ||| ||||| |||||||| |||||||||||||||||||| |||||||   ||||||||||||||||| ||||| |||||| | ||||||||||    
T  4700449 atcatactttgagagatagtgggataagtggtatgaactctgattttgacaatgctttggatggtcttcgtggtacgattctagattttgactgtagcag 4700350  T
Q  116 ttttagtagt 125  Q
    ||||| ||||    
T  4700349 ttttactagt 4700340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 24125836 - 24125635
Alignment:
Q  16 atcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcag 115  Q
    |||||||||| ||||| | ||||||   ||||||| ||||  |||| || ||||   ||||||||||||||||| |||||  ||||| | |   ||| ||    
T  24125836 atcatattttgagagacaatgggatatatggtatggactcgaattttgaaaatgctttggatggtcttcgtggtacgatttcagattttgatgttagtag 24125737  T
Q  116 ttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatg 214  Q
    ||||| ||| || ||| ||| ||||||||||||| ||||||||||||||| |||| |||||||||||| || ||||||||||||||| |||||||| |||    
T  24125736 ttttactagcaaagacatcgcccctcctaaagcataacatgttttggtgagtgctctttttagtaaaagtgttcaagatatggaagttaagtttgacatg 24125637  T
Q  215 ac 216  Q
    ||    
T  24125636 ac 24125635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 25021157 - 25021310
Alignment:
Q  73 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 171  Q
    |||||| |||||||||| ||||| |||||| | ||  |||||| |||| | |  ||||| | |||| ||||||||||||||||||||||| || |||  |    
T  25021157 tggatgatcttcgtggtacgattctagattttgacgttagcagctttactggcgaggacattgtccttcctaaagcacaacatgttttggcgagtgccct 25021256  T
Q  172 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagaca 225  Q
    ||||| ||||  || ||||||||||||||| ||||||||||||||||| |||||    
T  25021257 ttttattaaaggtgttcaagatatggaagttaagtttgatatgaccactagaca 25021310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 37517898 - 37517685
Alignment:
Q  16 atcatattttaagagaaagtgggatgagtggtatgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcag 115  Q
    |||||||||| ||||| |||||| |  |||| ||| |||| ||||| || ||||   ||||||||||||||||| |||||  | ||| | |   ||||||    
T  37517898 atcatattttgagagacagtgggttatgtggcatggactcggattttgaaaatgctttggatggtcttcgtggtacgatttaaaattttgatgttagcag 37517799  T
Q  116 ttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatg 214  Q
    ||||| ||| || |||  ||||||||||||||||| ||||||||||| || || | ||||||| |||| |  ||| |||||| |||| |||||||| |||    
T  37517798 ttttactagcaatgacaccgtccctcctaaagcacgacatgttttggcgagtgttctttttagaaaaagttttcatgatatgaaagttaagtttgacatg 37517699  T
Q  215 accacaagacagaa 228  Q
    ||||| ||| ||||    
T  37517698 accacgagatagaa 37517685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 139982 - 139891
Alignment:
Q  145 aagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagtt 235  Q
    ||||||||||||||||||||| || | ||||||||| || || | | ||| |||||||||||||||| |||||||| ||| |||||||||||    
T  139982 aagcacaacatgttttggtgagtgtcctttttagtagaaatgttaaggatgtggaagtgaagtttgacatgaccacgagatagaaagtagtt 139891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 500918 - 500843
Alignment:
Q  134 cgtccctcctaaagcacaacatgttttggtgaatgctttttt-agtaaaattgatcaagatatggaagtgaagttt 208  Q
    |||||||  |||||||||||||||||||| || ||||||||| ||||||| || ||||||||||||||| ||||||    
T  500918 cgtcccttttaaagcacaacatgttttggcgagtgctttttttagtaaaagtgttcaagatatggaagttaagttt 500843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 36006136 - 36006093
Alignment:
Q  187 tcaagatatggaagtgaagtttgatatgaccacaagacagaaag 230  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  36006136 tcaagatatggaagtgaagtttgacatgaccacaagatagaaag 36006093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 40840268 - 40840126
Alignment:
Q  110 tagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagttt 208  Q
    ||||| ||||| ||| ||||||  |||||||| ||||||  |||||||||||  || || | |||||||||||| || ||| ||||||||| | || |||    
T  40840268 tagcaattttactagcaaggacaccgtccctcttaaagccgaacatgttttgacgagtgtcatttttagtaaaagtgttcaggatatggaactaaaattt 40840169  T
Q  209 gatatgaccacaagacagaaagtagttcttgggtgttggcaag 251  Q
     ||||| |||||||||| |||  | || ||||||||| |||||    
T  40840168 aatatgcccacaagacacaaaacaatttttgggtgtttgcaag 40840126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 19277884 - 19277765
Alignment:
Q  110 tagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagttt 208  Q
    ||||| ||||| ||| || ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| ||  || ||||||||||| ||||||    
T  19277884 tagcatttttactagcaaagacatcgtccctcctaaagcacaacatgttttggtgagtgctctttttagtaaaagtgtccaggatatggaagtcaagttt 19277785  T
Q  209 gatatgaccacaagacagaa 228  Q
    || |||||||| || |||||    
T  19277784 gacatgaccacgaggcagaa 19277765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 47679811 - 47679717
Alignment:
Q  135 gtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 228  Q
    |||||||||||||||| ||||||||||| || | || ||||||||||||||| ||||||||||||||| |||||||| |||||||| ||||||||    
T  47679811 gtccctcctaaagcaccacatgttttggagagtactctttttagtaaaattgttcaagatatggaagttaagtttgacatgaccactagacagaa 47679717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 228
Target Start/End: Complemental strand, 5828006 - 5827850
Alignment:
Q  73 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 171  Q
    |||||||||||||  || |||||  ||||| | ||  ||| ||||||| | | ||||||  ||||||||||||||||||||||||||||| || |||| |    
T  5828006 tggatggtcttcgctgtacgattccagattttgacattagtagttttacttgcaaggacaccgtccctcctaaagcacaacatgttttggcgagtgctct 5827907  T
Q  172 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 228  Q
    | ||| |||||||| ||||||||| ||||| |||||||| ||| |||| ||||||||    
T  5827906 tcttaataaaattggtcaagatatagaagttaagtttgacatggccactagacagaa 5827850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 4175869 - 4175753
Alignment:
Q  134 cgtccctcctaaagcacaacatgttttggtgaatgcttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtag 233  Q
    |||||||  |||||||||||||| ||||| || ||  ||||| |||||| || ||||||||||||||  || ||||| |||||||| ||| ||||  |||    
T  4175869 cgtccctgttaaagcacaacatgctttggcgagtgtcttttttgtaaaagtgttcaagatatggaagctaa-tttgacatgaccactagatagaagatag 4175771  T
Q  234 ttcttgggtgttggcaag 251  Q
    || | ||||||| |||||    
T  4175770 ttttagggtgtttgcaag 4175753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 32585800 - 32585743
Alignment:
Q  171 tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 228  Q
    ||||||||||||||| | || ||||| |||| |||||||| |||||||| ||||||||    
T  32585800 tttttagtaaaattgtttaatatatgaaagttaagtttgacatgaccactagacagaa 32585743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 228
Target Start/End: Original strand, 28040483 - 28040638
Alignment:
Q  73 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 171  Q
    ||||||||||||||||| ||||| |||||| | |   ||||||||||| ||| || |||  | ||||||||||||||||||||||||| | || |||| |    
T  28040483 tggatggtcttcgtggtacgattctagattttgatgttagcagttttactagcaatgacaccatccctcctaaagcacaacatgtttttgcgagtgctct 28040582  T
Q  172 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 228  Q
    ||||||||||| || ||| ||||||||| | |||||||| |||||||| ||||||||    
T  28040583 ttttagtaaaaatg-tcaggatatggaaattaagtttgacatgaccacgagacagaa 28040638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 19036178 - 19036026
Alignment:
Q  73 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 171  Q
    ||||| |||||||||||| ||||  ||||| | |   ||||||||||| ||| || |||  |||||||| |||||||||||||||||||| || |||| |    
T  19036178 tggattgtcttcgtggtgggattccagatttttatgttagcagttttactagaaaagacc-cgtccctcataaagcacaacatgttttggcgagtgctct 19036080  T
Q  172 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagaca 225  Q
    ||||||||||| || ||| ||||||||||| |||||||| |||||||| |||||    
T  19036079 ttttagtaaaagtgttcaggatatggaagttaagtttgacatgaccacgagaca 19036026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 7435119 - 7435009
Alignment:
Q  52 actctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcaca 151  Q
    |||||||||| ||| ||||  |||||||||||||| || | ||| |||||| | ||| ||| ||||||| |||||||||| |||||||||| |||||| |    
T  7435119 actctgattttgacgatgttttggatggtcttcgtagtaccattctagattttgactttagtagttttactagtaaggacatcgtccctccaaaagcata 7435020  T
Q  152 acatgttttgg 162  Q
    |||||||||||    
T  7435019 acatgttttgg 7435009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 38732274 - 38732179
Alignment:
Q  134 cgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 228  Q
    ||||| ||||||||||||||| ||||||  || || |  ||||||||||| || ||||||||||||||| |||||||| |||| ||| ||||||||    
T  38732274 cgtccttcctaaagcacaacaagttttgacgattgtccattttagtaaaagtgttcaagatatggaagttaagtttgacatgatcactagacagaa 38732179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 36154680 - 36154781
Alignment:
Q  135 gtccctcctaaagcacaacatgttttggtga-atgcttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtag 233  Q
    |||||||||||| ||||||||||||||| ||  | | |||||||||||| || | | ||| ||||| |||||||||  ||||| |||||||| ||| |||    
T  36154680 gtccctcctaaaacacaacatgttttggcgagttccctttttagtaaaagtgtttaggatgtggaaatgaagtttggcatgactacaagacataaaatag 36154779  T
Q  234 tt 235  Q
    ||    
T  36154780 tt 36154781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 37200945 - 37200860
Alignment:
Q  133 tcgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccac 219  Q
    |||||| ||||||||| |||  ||||||||||| || | ||||||| |||| || ||||||||||||||| || ||||| ||||||||    
T  37200945 tcgtccatcctaaagcgcaa--tgttttggtgagtgtcctttttaggaaaagtgttcaagatatggaagttaaatttgacatgaccac 37200860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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