View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_low_6 (Length: 672)
Name: NF1262_low_6
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 146 - 575
Target Start/End: Original strand, 35405683 - 35406112
Alignment:
| Q |
146 |
ggatgaaaaacaaaga--aaataaatgggacaagtaagtctaaaaattagatttatgaagtattaatgacgaagtgtatggtggcagatgcaacattgaa |
243 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35405683 |
ggatgaaaaacaaagagaaaataaatgggacaagtaagtctaaaaattagatttatgaagtattaatgacgaagtgtatggtggcagatgcaacattgaa |
35405782 |
T |
|
| Q |
244 |
gaagtgcaataaaaggagcattgtttcagttgggtaggtctaccttttcataatggaatgctttcaataagtttttcaacttactcatttgaacccaccc |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35405783 |
gaagtgcaataaaaggagcattgtttcagttgggtaggtctaccttttcataatggaatcctttcaataagttt--caacttactcatttgaacccaccc |
35405880 |
T |
|
| Q |
344 |
ttcttctctcttattattcctcacacaaattttccctttgttcaatcccaaacaaagccaaaaattaaatcgttcaaactgcatgtagcagcacttcatc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35405881 |
ttcttctctcttattattcctcacacaaattttccctttgttcaatcccaaacaaagccaaaaattaaatcgttcaaactgcatgcagcagcacttcatc |
35405980 |
T |
|
| Q |
444 |
aataatatcatgcaccatcatcaatacatgaatcaaatgcatattcagacaatgatgatttgatgctgaaagttcaaaagagtctctgagcaacacctta |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35405981 |
aataatatcatgcaccatcatcaatacatgaatcaaatgcatattcagacaatgatgatttgatgctgaaagttcaaaagagtctctgagcaacacctta |
35406080 |
T |
|
| Q |
544 |
attaattcatctcaccaacctttcccttcttt |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
35406081 |
attaattcatctcaccaacctttcccttcttt |
35406112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 48021045 - 48020980
Alignment:
| Q |
217 |
gtgtatggtggcagatgcaacattgaagaagtgcaataaaaggagcattg-tttcagttgggtaggt |
282 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||| | | |||| |||||||||||||||| |
|
|
| T |
48021045 |
gtgtatggtggcagatgc-acattgaaggagtgcaataaaaaggggattgttttcagttgggtaggt |
48020980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University