View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_low_60 (Length: 295)
Name: NF1262_low_60
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_60 |
 | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 1399514 - 1399771
Alignment:
| Q |
9 |
gaataatatggaattttagcatgtttatgattatgacttgatttgctggagttttatgttatgaagtgtcgatagtgcatatagtaagagtgtcgtgttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1399514 |
gaataatatggaattttagcatgtttatgattatgacttgatttgctggagttttatgttatgaagtgtcgatagtgcatatagtaagagtgtcgtgttg |
1399613 |
T |
|
| Q |
109 |
gtgtcagacacctgacacatgcattcaatctgaagtgttgatagtacatagcacgagtgtttagatagatccaaaccgatataaannnnnnngcaaactg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1399614 |
gtgtcagacacctgacacatgcattcaatctgaagtgttgatagtacatagtacgagtgtttagatagatccaaaccgatataaacccccccgcaaactg |
1399713 |
T |
|
| Q |
209 |
atccaaagtaattaaaaacctatgaagcacaaacaactctaggattgggcgtgttcct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1399714 |
atccaaagtaattaaaaacctatgaagcaccaacaactctaggattgggcgtgttcct |
1399771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 144195 - 144241
Alignment:
| Q |
98 |
gtgtcgtgttggtgtcagacacctgacacatgcattcaatctgaagtgt |
146 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
144195 |
gtgtcgtgttggtgtcagacacctg--acattcatgcaatctgaagtgt |
144241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University