View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262_low_62 (Length: 292)

Name: NF1262_low_62
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262_low_62
NF1262_low_62
[»] chr6 (10 HSPs)
chr6 (29-235)||(7199904-7200110)
chr6 (54-226)||(34305076-34305249)
chr6 (91-209)||(10402325-10402443)
chr6 (115-209)||(32120524-32120619)
chr6 (115-200)||(45106-45192)
chr6 (107-209)||(29337493-29337597)
chr6 (54-209)||(32116231-32116386)
chr6 (124-231)||(8374724-8374831)
chr6 (123-223)||(22986501-22986602)
chr6 (123-223)||(23801792-23801893)
[»] chr4 (3 HSPs)
chr4 (54-210)||(23809054-23809211)
chr4 (29-210)||(53171093-53171275)
chr4 (60-209)||(56461475-56461625)
[»] chr5 (4 HSPs)
chr5 (91-209)||(27337289-27337408)
chr5 (33-209)||(15291357-15291534)
chr5 (91-216)||(433881-434008)
chr5 (54-190)||(6821559-6821696)
[»] chr3 (4 HSPs)
chr3 (54-196)||(29862407-29862553)
chr3 (54-206)||(49018551-49018704)
chr3 (115-202)||(43123754-43123842)
chr3 (120-182)||(53786326-53786389)
[»] chr2 (9 HSPs)
chr2 (54-209)||(9684769-9684926)
chr2 (54-209)||(18744373-18744529)
chr2 (94-209)||(28225595-28225711)
chr2 (115-206)||(17345237-17345329)
chr2 (91-202)||(20142137-20142249)
chr2 (115-199)||(34185475-34185560)
chr2 (117-200)||(8588690-8588774)
chr2 (116-200)||(41867325-41867410)
chr2 (115-209)||(19161243-19161337)
[»] chr8 (8 HSPs)
chr8 (54-197)||(24125635-24125779)
chr8 (54-206)||(25021157-25021310)
chr8 (29-106)||(4700340-4700417)
chr8 (126-216)||(139891-139982)
chr8 (115-189)||(500843-500918)
chr8 (54-209)||(37517685-37517841)
chr8 (168-211)||(36006093-36006136)
chr8 (91-232)||(40840126-40840268)
[»] chr7 (5 HSPs)
chr7 (91-209)||(19277765-19277884)
chr7 (116-209)||(47679717-47679811)
chr7 (54-209)||(5827850-5828006)
chr7 (115-232)||(4175753-4175869)
chr7 (152-209)||(32585743-32585800)
[»] chr1 (6 HSPs)
chr1 (54-209)||(28040483-28040638)
chr1 (54-206)||(19036026-19036178)
chr1 (33-143)||(7435009-7435119)
chr1 (115-209)||(38732179-38732274)
chr1 (116-216)||(36154680-36154781)
chr1 (114-200)||(37200860-37200945)
[»] scaffold0186 (1 HSPs)
scaffold0186 (110-209)||(20321-20421)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 7199904 - 7200110
Alignment:
Q  29 atgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaag 128  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  || ||||||||||||||||||||||||||||||||||    
T  7199904 atgaactctgatttagacaatgtcatggatggtctttgtggtgcgattctagattgtcactaaagtagttttagtagtaaggacttcgtccctcctaaag 7200003  T
Q  129 cacaacatgttttggtgaatgcttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgggtgttgg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7200004 cacaacatgttttggtgaatgcttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgggtgttgg 7200103  T
Q  229 caagaag 235  Q
    |||||||    
T  7200104 caagaag 7200110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 226
Target Start/End: Complemental strand, 34305249 - 34305076
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 152  Q
    ||||||||||||  |||||||||  ||||| | ||  || |||||||| | | ||||||  ||||||||||||||||||||||||||||| || |||| |    
T  34305249 tggatggtcttcacggtgcgattccagattttgacgttaacagttttacttgcaaggacaccgtccctcctaaagcacaacatgttttggcgagtgctct 34305150  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgggtgtt 226  Q
    |||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||| | |||| |||| ||||    
T  34305149 ttttagtaaaattgttcaagatatggaagttaagtttgacatgaccgcaagacagaaggaagtttttggatgtt 34305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 10402443 - 10402325
Alignment:
Q  91 tagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagttt 189  Q
    ||||||||||| | |||||||| |||||||||||||||||||||||||||||  || |||| |||||||| |||| | ||||||||||||||| ||||||    
T  10402443 tagcagttttacttgtaaggacatcgtccctcctaaagcacaacatgttttgacgagtgctctttttagt-aaatcgttcaagatatggaagttaagttt 10402345  T
Q  190 gatatgaccacaagacagaa 209  Q
    || |||||||| ||||||||    
T  10402344 gacatgaccactagacagaa 10402325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 32120619 - 32120524
Alignment:
Q  115 cgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    ||||||||||||||||||||||||||||| || |||| |||||||  ||| || ||||||||||||||| |||||||| |||||||||||||||||    
T  32120619 cgtccctcctaaagcacaacatgttttggcgagtgctctttttaggtaaagtgttcaagatatggaagttaagtttgacatgaccacaagacagaa 32120524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 45106 - 45192
Alignment:
Q  115 cgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccac 200  Q
    ||||||||||||||||||||||||||||| || |||| |||||||||||| || |||  |||||||||| |||||||| ||||||||    
T  45106 cgtccctcctaaagcacaacatgttttggcgagtgctctttttagtaaaagtgttcagaatatggaagttaagtttgacatgaccac 45192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 29337493 - 29337597
Alignment:
Q  107 aaggacttcgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaat-tgatcaagatatggaagtgaagtttgatatgaccacaaga 204  Q
    |||||| |||||| |||||||||||||||| ||||||||| || | |||||||||||||   |||||||||||||||| |||||||| |||||| | |||    
T  29337493 aaggacatcgtccatcctaaagcacaacatattttggtgagtgccctttttagtaaaataaaatcaagatatggaagttaagtttgacatgacctctaga 29337592  T
Q  205 cagaa 209  Q
    |||||    
T  29337593 cagaa 29337597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 32116386 - 32116231
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 152  Q
    |||||| |||||||||| |||||  ||||| | ||  ||||||||||| ||| || |||  ||||| ||||||||||||||||||||||  || || | |    
T  32116386 tggatgatcttcgtggtacgattccagatt-tgacgttagcagttttactagcaaagacaacgtccttcctaaagcacaacatgttttgacgagtgatct 32116288  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    ||||||||||| || ||||||||||||||| |||||||| |  ||||| ||||||||    
T  32116287 ttttagtaaaagtgttcaagatatggaagttaagtttgacacaaccacgagacagaa 32116231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 8374724 - 8374831
Alignment:
Q  124 taaagcacaacatgttttggtgaatgcttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgggt 223  Q
    ||||||||| ||| ||||| |||| |  |||||||||||| || ||| |||||||||||||| ||||| ||||||||  |||||||||||||| || |||    
T  8374724 taaagcacatcatattttgatgaacgtctttttagtaaaagtgttcaggatatggaagtgaaatttgacatgaccacgcgacagaaagtagtttttcggt 8374823  T
Q  224 gttggcaa 231  Q
    ||| ||||    
T  8374824 gtttgcaa 8374831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 22986602 - 22986501
Alignment:
Q  123 ctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgg 221  Q
    ||||||||||| ||||||||| |  || |||||||||||||| || | |||||| | ||||||||||||| ||| |||||||| |||||| |||| ||||    
T  22986602 ctaaagcacaatatgttttggcgtgtgtcttttttagtaaaagtgttaaagataagaaagtgaagtttgacatgtccacaagaaagaaagcagtttttgg 22986503  T
Q  222 gt 223  Q
    ||    
T  22986502 gt 22986501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 23801792 - 23801893
Alignment:
Q  123 ctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgg 221  Q
    ||||||||||| ||||||||| |  || |||||||||||||| || | |||||| | ||||||||||||| ||| |||||||| |||||| |||| ||||    
T  23801792 ctaaagcacaatatgttttggcgtgtgtcttttttagtaaaagtgttaaagataagaaagtgaagtttgacatgtccacaagaaagaaagcagtttttgg 23801891  T
Q  222 gt 223  Q
    ||    
T  23801892 gt 23801893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 210
Target Start/End: Original strand, 23809054 - 23809211
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaat-gctt 152  Q
    |||||||||||||||||  |||| || ||| | ||| ||| ||||||| ||||||||||  |||||||| ||||||||||||| ||||||||| | | ||    
T  23809054 tggatggtcttcgtggtatgattttaaattttgactttagtagttttactagtaaggacaccgtccctcataaagcacaacatattttggtgattggttt 23809153  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaa 210  Q
    ||||||||||| || |||||||||||||||||| ||||| ||||||| ||| ||||||    
T  23809154 ttttagtaaaaatgttcaagatatggaagtgaaatttgacatgaccataaggcagaaa 23809211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 53171275 - 53171093
Alignment:
Q  29 atgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaag 128  Q
    |||||||| ||||| || ||| |  ||||| |||||||||||||||||  ||||| | |   ||| ||||||| ||| || ||| |||||||||||||||    
T  53171275 atgaactcggattttgataatattttggattgtcttcgtggtgcgatttcagattttgatgttagtagttttactagcaaagacatcgtccctcctaaag 53171176  T
Q  129 cacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaa 210  Q
    ||||||||||||||| || |||| |||||||||||| || |||| |||||||||| |||||||| || ||||| ||| |||||    
T  53171175 cacaacatgttttggcgagtgctctttttagtaaaagtgttcaaaatatggaagttaagtttgacataaccacgagaaagaaa 53171093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 56461475 - 56461625
Alignment:
Q  60 gtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgc--tttttta 157  Q
    ||||||||||| ||||| |||||| | ||  | ||||||||| ||| |||||| | ||||||||||||||||||||| |||||| || |||  |||||||    
T  56461475 gtcttcgtggtacgattctagattttgacattggcagttttactagcaaggacattgtccctcctaaagcacaacatattttggcgagtgctttttttta 56461574  T
Q  158 gtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    |||||| || ||||||||||||||| ||| || | |||||||| ||||||||    
T  56461575 gtaaaagtgttcaagatatggaagttaag-ttcacatgaccactagacagaa 56461625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 27337408 - 27337289
Alignment:
Q  91 tagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagttt 189  Q
    ||||||||||| | | ||||||  ||||||||||||||||||||||||||||| || |||| ||||||||||| ||| ||||||||||||||| ||||||    
T  27337408 tagcagttttacttgcaaggacaccgtccctcctaaagcacaacatgttttggcgagtgctctttttagtaaagttgttcaagatatggaagttaagttt 27337309  T
Q  190 gatatgaccacaagacagaa 209  Q
    || |||||||| ||||||||    
T  27337308 gacatgaccactagacagaa 27337289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 33 - 209
Target Start/End: Original strand, 15291357 - 15291534
Alignment:
Q  33 actctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcaca 132  Q
    |||| ||||| || |||||  ||||||||||||||||| | ||| |||||| | ||  ||||||||||| ||| || |||  |||||||||||||||  |    
T  15291357 actcggatttcgataatgttttggatggtcttcgtggtacaattttagattttgacgttagcagttttactagcaaagacaccgtccctcctaaagcgga 15291456  T
Q  133 acatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    ||||||||||  || |||| |||||||||||| || ||||||||||||||| |||||||| |||||||| ||||||||    
T  15291457 acatgttttgacgagtgctctttttagtaaaagtgttcaagatatggaagttaagtttgacatgaccacgagacagaa 15291534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 434008 - 433881
Alignment:
Q  91 tagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgtttt-ggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtt 188  Q
    ||||||||||| | | ||||||  ||||||||||||||||||||||||||| ||||| | || ||||||||||| ||| ||||||||||||| | |||||    
T  434008 tagcagttttacttgcaaggacaccgtccctcctaaagcacaacatgtttttggtgagtcctctttttagtaaagttgttcaagatatggaacttaagtt 433909  T
Q  189 tgatatgaccacaagacagaaagtagtt 216  Q
    ||| |||||||| || ||||| ||||||    
T  433908 tgaaatgaccactaggcagaaggtagtt 433881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 6821559 - 6821696
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 152  Q
    ||||||||||||||||| |||||  ||||| | ||  || |||||||| ||| || ||| ||||||||||||||  | || ||||||||| || |||| |    
T  6821559 tggatggtcttcgtggtacgattccagattttgacgttaacagttttactagcaaagacatcgtccctcctaaaatataaaatgttttggcgagtgctct 6821658  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttg 190  Q
    ||||||||||| || |||||||||| || |||||||||    
T  6821659 ttttagtaaaagtgttcaagatatgaaaatgaagtttg 6821696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 29862553 - 29862407
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgc--- 150  Q
    ||||||||||||||||| ||||| |||||| |  |  ||| ||||||| ||  |||||| ||||||||||||||||||||||||||||||  |||||       
T  29862553 tggatggtcttcgtggtacgattctagattttggcattagtagttttactaacaaggacatcgtccctcctaaagcacaacatgttttggccaatgctgt 29862454  T
Q  151 -ttttttagtaaaattgatcaagatatggaagtgaagtttgatatga 196  Q
     ||||||||||||| || ||||||||||||||| |||||||| ||||    
T  29862453 tttttttagtaaaagtgttcaagatatggaagttaagtttgacatga 29862407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 49018704 - 49018551
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 152  Q
    |||||||| |||||| | ||||| |||||| | ||  ||||||||||| ||| || ||| | ||| |||||||||||||||||||||||| || |||| |    
T  49018704 tggatggttttcgtgctacgattctagattttgacgttagcagttttactagcaaagacattgtctctcctaaagcacaacatgttttggcgagtgctct 49018605  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagaca 206  Q
    ||||| ||||| |  |||||||||| |||| ||||||||  ||||||| |||||    
T  49018604 ttttaataaaagttttcaagatatgtaagttaagtttgacgtgaccacgagaca 49018551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 43123842 - 43123754
Alignment:
Q  115 cgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaa 202  Q
    |||||||||||||| ||||||||| ||||||| || |||||||| ||||| || |||| |||| ||| | |||||||| ||||||||||    
T  43123842 cgtccctcctaaagtacaacatgtattggtgagtgtcttttttaataaaagtgttcaacatattgaaataaagtttgacatgaccacaa 43123754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 53786389 - 53786326
Alignment:
Q  120 ctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagt 182  Q
    |||||||| ||||||||||||||| || |||| |||||||||||| || |||||| ||||||||    
T  53786389 ctcctaaaacacaacatgttttggcgagtgctctttttagtaaaagtgttcaagacatggaagt 53786326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 9684769 - 9684926
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagt-agtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct- 151  Q
    |||||||||||||||||||||||  ||||| | |   ||||| ||||| | || || ||| ||||||||| ||||||||||||||||||||||| ||||     
T  9684769 tggatggtcttcgtggtgcgattccagattttgatgttagcatttttacttagcaaagacatcgtccctcttaaagcacaacatgttttggtgagtgctc 9684868  T
Q  152 tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    |||||| ||||| || ||| ||||||||||| |||||||| |||||||| ||||||||    
T  9684869 tttttaataaaagtgttcaggatatggaagttaagtttgacatgaccacgagacagaa 9684926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 18744373 - 18744529
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 152  Q
    ||||||||||||||||| | |||  ||||| | |   ||||||||||| ||| || |||  |||| |||||||||||||||||||||||| || |||| |    
T  18744373 tggatggtcttcgtggtacaattccagattttgatgttagcagttttactagcaaagacaccgtctctcctaaagcacaacatgttttggcgagtgctct 18744472  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    ||||||||||| || ||| ||||||||||| |||||||| |||||||| ||||||||    
T  18744473 ttttagtaaaagtgttcaggatatggaagttaagtttgagatgaccacgagacagaa 18744529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 28225711 - 28225595
Alignment:
Q  94 cagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgat 192  Q
    |||||||| | | ||||||  |||||||||||||||||||||| |||||| || |||| ||||||||||||||| ||||||||||||||| | ||||||     
T  28225711 cagttttacttgcaaggacaccgtccctcctaaagcacaacatattttggcgagtgctctttttagtaaaattgttcaagatatggaagttatgtttgac 28225612  T
Q  193 atgaccacaagacagaa 209  Q
    |||||||| ||||||||    
T  28225611 atgaccactagacagaa 28225595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 17345329 - 17345237
Alignment:
Q  115 cgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagaca 206  Q
    |||||||||||||||||||| ||||||||||| |||| |||||||||||| || |||  |||||||||| |||||||| |||||||| |||||    
T  17345329 cgtccctcctaaagcacaacttgttttggtgagtgctctttttagtaaaagtgttcagcatatggaagttaagtttgacatgaccaccagaca 17345237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 20142137 - 20142249
Alignment:
Q  91 tagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagttt 189  Q
    ||||||||||| ||| || |||  |||| ||||||||||||||||||| |||| || |||| ||||||||||||  | ||| ||||||||||| ||||||    
T  20142137 tagcagttttactagcaaagacaccgtctctcctaaagcacaacatgtcttggcgagtgctctttttagtaaaagcgttcaggatatggaagttaagttt 20142236  T
Q  190 gatatgaccacaa 202  Q
    || ||||||||||    
T  20142237 gacatgaccacaa 20142249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 34185475 - 34185560
Alignment:
Q  115 cgtccctcctaaagcacaacatgttttggtgaatgc-ttttttagtaaaattgatcaagatatggaagtgaagtttgatatgacca 199  Q
    |||||| ||||||| | ||||| |||||| || ||| ||||||||||||| || |||||||||||||||||||||||| |||||||    
T  34185475 cgtcccacctaaagtagaacatattttggcgagtgccttttttagtaaaagtgttcaagatatggaagtgaagtttgagatgacca 34185560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 8588774 - 8588690
Alignment:
Q  117 tccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccac 200  Q
    ||||||| ||||||||||||||||||| || || | |||||| ||||| || ||||||||||||||| |||||||| ||||||||    
T  8588774 tccctccaaaagcacaacatgttttggcgagtgtcctttttaataaaagtgttcaagatatggaagtcaagtttgacatgaccac 8588690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 41867325 - 41867410
Alignment:
Q  116 gtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccac 200  Q
    |||||||||||| |||||||| |||||| || |||| |||||||||||| ||  || ||||||||||| |||||||| ||||||||    
T  41867325 gtccctcctaaaacacaacatattttggcgagtgctctttttagtaaaagtgtccaggatatggaagtcaagtttgacatgaccac 41867410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 19161243 - 19161337
Alignment:
Q  115 cgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    |||||||||||| ||||||||||||| ||  | |||| |||||  ||||| || ||||||||||||||| |||||||| |||| ||| ||||||||    
T  19161243 cgtccctcctaatgcacaacatgttt-ggcaagtgctctttttcataaaaatgttcaagatatggaagttaagtttgacatgatcacgagacagaa 19161337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 24125779 - 24125635
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 152  Q
    ||||||||||||||||| |||||  ||||| | |   ||| ||||||| ||| || ||| ||| ||||||||||||| ||||||||||||||| |||| |    
T  24125779 tggatggtcttcgtggtacgatttcagattttgatgttagtagttttactagcaaagacatcgcccctcctaaagcataacatgttttggtgagtgctct 24125680  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgac 197  Q
    ||||||||||| || ||||||||||||||| |||||||| |||||    
T  24125679 ttttagtaaaagtgttcaagatatggaagttaagtttgacatgac 24125635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 25021157 - 25021310
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 152  Q
    |||||| |||||||||| ||||| |||||| | ||  |||||| |||| | |  ||||| | |||| ||||||||||||||||||||||| || |||  |    
T  25021157 tggatgatcttcgtggtacgattctagattttgacgttagcagctttactggcgaggacattgtccttcctaaagcacaacatgttttggcgagtgccct 25021256  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagaca 206  Q
    ||||| ||||  || ||||||||||||||| ||||||||||||||||| |||||    
T  25021257 ttttattaaaggtgttcaagatatggaagttaagtttgatatgaccactagaca 25021310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 4700417 - 4700340
Alignment:
Q  29 atgaactctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagt 106  Q
    |||||||||||||| |||||||   ||||||||||||||||| ||||| |||||| | ||||||||||||||| ||||    
T  4700417 atgaactctgattttgacaatgctttggatggtcttcgtggtacgattctagattttgactgtagcagttttactagt 4700340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 139982 - 139891
Alignment:
Q  126 aagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagtt 216  Q
    ||||||||||||||||||||| || | ||||||||| || || | | ||| |||||||||||||||| |||||||| ||| |||||||||||    
T  139982 aagcacaacatgttttggtgagtgtcctttttagtagaaatgttaaggatgtggaagtgaagtttgacatgaccacgagatagaaagtagtt 139891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 500918 - 500843
Alignment:
Q  115 cgtccctcctaaagcacaacatgttttggtgaatgctttttt-agtaaaattgatcaagatatggaagtgaagttt 189  Q
    |||||||  |||||||||||||||||||| || ||||||||| ||||||| || ||||||||||||||| ||||||    
T  500918 cgtcccttttaaagcacaacatgttttggcgagtgctttttttagtaaaagtgttcaagatatggaagttaagttt 500843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 37517841 - 37517685
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 152  Q
    ||||||||||||||||| |||||  | ||| | |   ||||||||||| ||| || |||  ||||||||||||||||| ||||||||||| || || | |    
T  37517841 tggatggtcttcgtggtacgatttaaaattttgatgttagcagttttactagcaatgacaccgtccctcctaaagcacgacatgttttggcgagtgttct 37517742  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    |||||| |||| |  ||| |||||| |||| |||||||| |||||||| ||| ||||    
T  37517741 ttttagaaaaagttttcatgatatgaaagttaagtttgacatgaccacgagatagaa 37517685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 36006136 - 36006093
Alignment:
Q  168 tcaagatatggaagtgaagtttgatatgaccacaagacagaaag 211  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  36006136 tcaagatatggaagtgaagtttgacatgaccacaagatagaaag 36006093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 232
Target Start/End: Complemental strand, 40840268 - 40840126
Alignment:
Q  91 tagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagttt 189  Q
    ||||| ||||| ||| ||||||  |||||||| ||||||  |||||||||||  || || | |||||||||||| || ||| ||||||||| | || |||    
T  40840268 tagcaattttactagcaaggacaccgtccctcttaaagccgaacatgttttgacgagtgtcatttttagtaaaagtgttcaggatatggaactaaaattt 40840169  T
Q  190 gatatgaccacaagacagaaagtagttcttgggtgttggcaag 232  Q
     ||||| |||||||||| |||  | || ||||||||| |||||    
T  40840168 aatatgcccacaagacacaaaacaatttttgggtgtttgcaag 40840126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 19277884 - 19277765
Alignment:
Q  91 tagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagttt 189  Q
    ||||| ||||| ||| || ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| ||  || ||||||||||| ||||||    
T  19277884 tagcatttttactagcaaagacatcgtccctcctaaagcacaacatgttttggtgagtgctctttttagtaaaagtgtccaggatatggaagtcaagttt 19277785  T
Q  190 gatatgaccacaagacagaa 209  Q
    || |||||||| || |||||    
T  19277784 gacatgaccacgaggcagaa 19277765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 47679811 - 47679717
Alignment:
Q  116 gtccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    |||||||||||||||| ||||||||||| || | || ||||||||||||||| ||||||||||||||| |||||||| |||||||| ||||||||    
T  47679811 gtccctcctaaagcaccacatgttttggagagtactctttttagtaaaattgttcaagatatggaagttaagtttgacatgaccactagacagaa 47679717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 5828006 - 5827850
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 152  Q
    |||||||||||||  || |||||  ||||| | ||  ||| ||||||| | | ||||||  ||||||||||||||||||||||||||||| || |||| |    
T  5828006 tggatggtcttcgctgtacgattccagattttgacattagtagttttacttgcaaggacaccgtccctcctaaagcacaacatgttttggcgagtgctct 5827907  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    | ||| |||||||| ||||||||| ||||| |||||||| ||| |||| ||||||||    
T  5827906 tcttaataaaattggtcaagatatagaagttaagtttgacatggccactagacagaa 5827850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 4175869 - 4175753
Alignment:
Q  115 cgtccctcctaaagcacaacatgttttggtgaatgcttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtag 214  Q
    |||||||  |||||||||||||| ||||| || ||  ||||| |||||| || ||||||||||||||  || ||||| |||||||| ||| ||||  |||    
T  4175869 cgtccctgttaaagcacaacatgctttggcgagtgtcttttttgtaaaagtgttcaagatatggaagctaa-tttgacatgaccactagatagaagatag 4175771  T
Q  215 ttcttgggtgttggcaag 232  Q
    || | ||||||| |||||    
T  4175770 ttttagggtgtttgcaag 4175753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 32585800 - 32585743
Alignment:
Q  152 tttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    ||||||||||||||| | || ||||| |||| |||||||| |||||||| ||||||||    
T  32585800 tttttagtaaaattgtttaatatatgaaagttaagtttgacatgaccactagacagaa 32585743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 28040483 - 28040638
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 152  Q
    ||||||||||||||||| ||||| |||||| | |   ||||||||||| ||| || |||  | ||||||||||||||||||||||||| | || |||| |    
T  28040483 tggatggtcttcgtggtacgattctagattttgatgttagcagttttactagcaatgacaccatccctcctaaagcacaacatgtttttgcgagtgctct 28040582  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    ||||||||||| || ||| ||||||||| | |||||||| |||||||| ||||||||    
T  28040583 ttttagtaaaaatg-tcaggatatggaaattaagtttgacatgaccacgagacagaa 28040638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 19036178 - 19036026
Alignment:
Q  54 tggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcacaacatgttttggtgaatgct-t 152  Q
    ||||| |||||||||||| ||||  ||||| | |   ||||||||||| ||| || |||  |||||||| |||||||||||||||||||| || |||| |    
T  19036178 tggattgtcttcgtggtgggattccagatttttatgttagcagttttactagaaaagacc-cgtccctcataaagcacaacatgttttggcgagtgctct 19036080  T
Q  153 ttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagaca 206  Q
    ||||||||||| || ||| ||||||||||| |||||||| |||||||| |||||    
T  19036079 ttttagtaaaagtgttcaggatatggaagttaagtttgacatgaccacgagaca 19036026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 7435119 - 7435009
Alignment:
Q  33 actctgatttagacaatgtcatggatggtcttcgtggtgcgattgtagattgtcactgtagcagttttagtagtaaggacttcgtccctcctaaagcaca 132  Q
    |||||||||| ||| ||||  |||||||||||||| || | ||| |||||| | ||| ||| ||||||| |||||||||| |||||||||| |||||| |    
T  7435119 actctgattttgacgatgttttggatggtcttcgtagtaccattctagattttgactttagtagttttactagtaaggacatcgtccctccaaaagcata 7435020  T
Q  133 acatgttttgg 143  Q
    |||||||||||    
T  7435019 acatgttttgg 7435009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 38732274 - 38732179
Alignment:
Q  115 cgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaa 209  Q
    ||||| ||||||||||||||| ||||||  || || |  ||||||||||| || ||||||||||||||| |||||||| |||| ||| ||||||||    
T  38732274 cgtccttcctaaagcacaacaagttttgacgattgtccattttagtaaaagtgttcaagatatggaagttaagtttgacatgatcactagacagaa 38732179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 36154680 - 36154781
Alignment:
Q  116 gtccctcctaaagcacaacatgttttggtga-atgcttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacagaaagtag 214  Q
    |||||||||||| ||||||||||||||| ||  | | |||||||||||| || | | ||| ||||| |||||||||  ||||| |||||||| ||| |||    
T  36154680 gtccctcctaaaacacaacatgttttggcgagttccctttttagtaaaagtgtttaggatgtggaaatgaagtttggcatgactacaagacataaaatag 36154779  T
Q  215 tt 216  Q
    ||    
T  36154780 tt 36154781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 37200945 - 37200860
Alignment:
Q  114 tcgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccac 200  Q
    |||||| ||||||||| |||  ||||||||||| || | ||||||| |||| || ||||||||||||||| || ||||| ||||||||    
T  37200945 tcgtccatcctaaagcgcaa--tgttttggtgagtgtcctttttaggaaaagtgttcaagatatggaagttaaatttgacatgaccac 37200860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 20421 - 20321
Alignment:
Q  110 gacttcgtccctcctaaagcacaacatgttttggtgaatg-cttttttagtaaaattgatcaagatatggaagtgaagtttgatatgaccacaagacaga 208  Q
    |||| |||| |||||||||||||||||||||||| ||||| | |||||| ||||| || |||||||||| |||| |||||||| |||||||| |||||||    
T  20421 gactccgtctctcctaaagcacaacatgttttggcgaatgccctttttaataaaagtgttcaagatatgaaagttaagtttgacatgaccactagacaga 20322  T
Q  209 a 209  Q
    |    
T  20321 a 20321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University