View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262_low_65 (Length: 283)

Name: NF1262_low_65
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262_low_65
NF1262_low_65
[»] chr4 (4 HSPs)
chr4 (5-86)||(49771662-49771743)
chr4 (207-275)||(49771481-49771549)
chr4 (5-86)||(38167618-38167698)
chr4 (8-86)||(38166635-38166713)
[»] chr3 (6 HSPs)
chr3 (5-86)||(32635729-32635810)
chr3 (5-82)||(32637034-32637111)
chr3 (5-86)||(40476356-40476437)
chr3 (5-86)||(40477217-40477298)
chr3 (211-266)||(40476536-40476592)
chr3 (211-265)||(32635926-32635980)
[»] chr1 (1 HSPs)
chr1 (5-86)||(23469812-23469893)
[»] chr8 (1 HSPs)
chr8 (212-265)||(9464990-9465044)


Alignment Details
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 49771743 - 49771662
Alignment:
Q  5 ttggcgcatttttgcataaatggcattagctaactgtgtcactttgtccacttggcatccatgtggcatttatttcaattaa 86  Q
    |||| ||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  49771743 ttggtgcatttttgcatacatggcattagctaactgtgctactttgtccacttggcatccatgtggcatttatttcaattaa 49771662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 49771549 - 49771481
Alignment:
Q  207 ctttcggttcccccattttcccctttccttctctgcttcttcttcaatggaactcattcaccctatgct 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  49771549 ctttcggttcccccattttcccctttccttctctgcttcttcttcaaaggaactcattcaccctctgct 49771481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 38167698 - 38167618
Alignment:
Q  5 ttggcgcatttttgcataaatggcattagctaactgtgtcactttgtccacttggcatccatgtggcatttatttcaattaa 86  Q
    ||||| |||||||||||| ||| |||||| | || ||||||||||||||||||||||||||  || ||||||||||||||||    
T  38167698 ttggcacatttttgcatacatgacattagttgac-gtgtcactttgtccacttggcatccacatgacatttatttcaattaa 38167618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 38166635 - 38166713
Alignment:
Q  8 gcgcatttttgcataaatggcattagctaactgtgtcactttgtccacttggcatccatgtggcatttatttcaattaa 86  Q
    |||||||||||||||  || | |||||| ||  | |||||||||||||||| |||||| ||||||||||||||||||||    
T  38166635 gcgcatttttgcatacttgtcgttagcttaccatatcactttgtccacttgccatccacgtggcatttatttcaattaa 38166713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 32635729 - 32635810
Alignment:
Q  5 ttggcgcatttttgcataaatggcattagctaactgtgtcactttgtccacttggcatccatgtggcatttatttcaattaa 86  Q
    ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  32635729 ttggcgcatttttacatatgtggcattagctaactgtgtcactttgtccacttggcatccacgtgacatttatttcaattaa 32635810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 32637111 - 32637034
Alignment:
Q  5 ttggcgcatttttgcataaatggcattagctaactgtgtcactttgtccacttggcatccatgtggcatttatttcaa 82  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  32637111 ttggcgcatttttgcatatgtggcattagctgactgtgtcactttgtccacttagcatccacgtggcatttatttcaa 32637034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 40476356 - 40476437
Alignment:
Q  5 ttggcgcatttttgcataaatggcattagctaactgtgtcactttgtccacttggcatccatgtggcatttatttcaattaa 86  Q
    ||||| ||||||||||||  ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  40476356 ttggcacatttttgcatacgtggcattagctgactgtgtcactttatccacttggcatccatgtggcatttattttaattaa 40476437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 40477298 - 40477217
Alignment:
Q  5 ttggcgcatttttgcataaatggcattagctaactgtgtcactttgtccacttggcatccatgtggcatttatttcaattaa 86  Q
    ||||||| | ||||||||  ||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  40477298 ttggcgcttatttgcatatgtggcattagttgactatgtcactttgtccacttggcatccatgtgacatttatttcaattaa 40477217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 40476536 - 40476592
Alignment:
Q  211 cggttcccccattttcccc-tttccttctctgcttcttcttcaatggaactcattca 266  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40476536 cggttcccccattttccccctttccttctctgcttcttcttcaatggaactcattca 40476592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 32635926 - 32635980
Alignment:
Q  211 cggttcccccattttcccctttccttctctgcttcttcttcaatggaactcattc 265  Q
    |||||||||  ||| |||||||||||| ||  |||||||||||||||||||||||    
T  32635926 cggttccccattttccccctttccttccctatttcttcttcaatggaactcattc 32635980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 23469893 - 23469812
Alignment:
Q  5 ttggcgcatttttgcataaatggcattagctaactgtgtcactttgtccacttggcatccatgtggcatttatttcaattaa 86  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  23469893 ttggcgcatttttgcatatgtggcattagctgactgtgtcactttgcccacttggcatccacgtggcatttatttcaattaa 23469812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 9465044 - 9464990
Alignment:
Q  212 ggttcccccattttcccc-tttccttctctgcttcttcttcaatggaactcattc 265  Q
    |||||||| ||||||||| |||||||| |||||| |||||| |||||||||||||    
T  9465044 ggttcccctattttccccctttccttccctgcttattcttcgatggaactcattc 9464990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University