View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_66 (Length: 277)
Name: NF1262_low_66
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_66 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 42 - 277
Target Start/End: Complemental strand, 27314116 - 27313882
Alignment:
| Q |
42 |
atgatggtatgcatttgtgtttcccttgtttggtgtaacaaacttaatgattctataagtagaaaaataatttcccgcccccttttgtgtgtgacattgt |
141 |
Q |
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| T |
27314116 |
atgagggtatgcatttgtgtttcccttgtttggtgtaacaaacttaatgattctataagtagaaaaataatttcccgccccattttgtgtgtgacattgt |
27314017 |
T |
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| Q |
142 |
attatgcnnnnnnnngatatagtttagaatatgcaataatcaaactttcctatcttcaattctctttcagagaggcatagtggagatagtgcataatggt |
241 |
Q |
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| T |
27314016 |
attatgcaaaaaaa-gatatagtttagaatatgcaataatcaaactttcctatcttcaattctctttcagagaggcatagtggagatagtgcataatggt |
27313918 |
T |
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| Q |
242 |
tgtgagttctttaaatggttgatgagtaaagcaaac |
277 |
Q |
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| T |
27313917 |
tgtgagttctttaaatggttgatgagtaaagcaaac |
27313882 |
T |
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