View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_70 (Length: 265)
Name: NF1262_low_70
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 49510078 - 49509822
Alignment:
| Q |
1 |
aatatgatattgctcgtgtatcgaatgttgccacggcaaatcaaaacaatacatggaatgttcagttgtttagatcgatcgatgctggtgctgcttctgg |
100 |
Q |
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| T |
49510078 |
aatatgatattgctcgtgtatcgaatgttgccacggcaaatcaaaacaatacatggaatgttcagttgtttagatcaatcgatgctggtgctgcttctgg |
49509979 |
T |
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| Q |
101 |
cttccctcaagatccaacagaagccgctgaaaaaggtcttgttactggaaaagataacatcattgatagaagcattcaagatgcctacataaacgctatt |
200 |
Q |
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| T |
49509978 |
cttccctcaagatccaacagaagccgccgaaaaaggtcttgttactggaaaagataacatcattgatagaagcattcaagatgcctacataaacgctatt |
49509879 |
T |
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| Q |
201 |
cgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagttcatat |
257 |
Q |
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| T |
49509878 |
cgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagttcatat |
49509822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 253
Target Start/End: Complemental strand, 49521171 - 49520972
Alignment:
| Q |
54 |
tggaatgttcagttgtttagatcgatcgatgctggtgctgcttctggcttccctcaagatccaacagaagccgctgaaaaaggtcttgttactggaaaag |
153 |
Q |
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| T |
49521171 |
tggagtgttcagttgtttagatccattgatggtggtgctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagtggaaaag |
49521072 |
T |
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| Q |
154 |
ataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagttc |
253 |
Q |
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| T |
49521071 |
acaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttc |
49520972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 44662641 - 44662729
Alignment:
| Q |
153 |
gataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattt |
241 |
Q |
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| T |
44662641 |
gataacataatagataggagtattcaagatgcttatatcaatgctattcgacgcgcaaagaatttcatctacattgaaaatcaatattt |
44662729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 2416424 - 2416329
Alignment:
| Q |
146 |
tggaaaagataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattt |
241 |
Q |
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| T |
2416424 |
tggaaaggataatatcatcgatcgtagcattcaagatgcttatattaatgctattcggcgtgcaaagaacttcatctatattgaaaatcagtattt |
2416329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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