View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_72 (Length: 263)
Name: NF1262_low_72
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_72 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 43287309 - 43287056
Alignment:
| Q |
9 |
atgaagataagaagtatagggaatccaagcaggctaaatatgtcagattaagttagtatcggtctcagcatttcagacttaaaaaaccctccaattacta |
108 |
Q |
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| T |
43287309 |
atgaagataagaagtatagggaatccaagcaggctaaatatgtcagattaagttagtatcggtctcagcatttcagacttaaaaaaccctccaattacta |
43287210 |
T |
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| Q |
109 |
tacactctaaaatgacactaaatcatgcatataacagtaacattgaaaaatagttgaaacaccaaactacaatgattaaattaaatggacaaacaagacc |
208 |
Q |
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| T |
43287209 |
tacactctaaaatgacactaaatcatgcatataacagtaacattgaaaaatagttgaaacacc-aactagaatgattaaattaaatggacaaataagacc |
43287111 |
T |
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| Q |
209 |
ataaagttttgattgcattgatagtgtgggtaggggactagtttggccaatgcct |
263 |
Q |
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| T |
43287110 |
ataaagttttgattgcattgatagtgtgggtaggggactagtttggccaatgcct |
43287056 |
T |
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