View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_8 (Length: 582)
Name: NF1262_low_8
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 41101756 - 41101440
Alignment:
| Q |
9 |
gaacaatatggaagaagtgtgtaacagcaatacataatgaacaatggagatcatgctannnnnnnnaacagcatattatatatatgaaaagagcttccac |
108 |
Q |
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| T |
41101756 |
gaacaaaatggaagaggtgtgtaagagcaatacataatgaacaatggagatcatgctattttttttaacagcatattatatatatgaaaagagcttccac |
41101657 |
T |
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| Q |
109 |
aaagatagtgggatgagctcaaaattacagaggagaataaagcatcctcacgcccccaacataacaacacctaccaaaactacacaaacacctcctgtta |
208 |
Q |
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| T |
41101656 |
aaagatagtgggatgagctcaaaattacagaggacaataaagcatcctcacgcccccaacataacaacacctaccaaaactacacaaacccctcctgtta |
41101557 |
T |
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| Q |
209 |
cagtaaacgcttaaaaatacaatctcagcaggacaaaattcgcccagcaaaacaacacaggtcaaacctcccctaaagaacaaaaacgcaaacaaaccat |
308 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |
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| T |
41101556 |
cagtaaacgcttaaaaatacaatctcaacaggacaaaattcgcccagcaaaacaacacagatcaaacctctcctaaagaacaaaaacgcaaacaaaacat |
41101457 |
T |
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| Q |
309 |
gtgattcttgttaccac |
325 |
Q |
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| T |
41101456 |
gtgattcttgtcaccac |
41101440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 432 - 553
Target Start/End: Complemental strand, 41101332 - 41101207
Alignment:
| Q |
432 |
tgttaactcaccttgtttctttttagcttctattgaaggatttgagaagaaaaagatacatgcacaacttcaattgctcaaaaaggaaggttttgtgagg |
531 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |
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| T |
41101332 |
tgttaactcatcttgattctttttagcttctattgaaggatttgagaagaaaaagataaatgtaaaacttcaattgctcaaaaaggaaggttttgtgagg |
41101233 |
T |
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| Q |
532 |
----tgtaggtgagagagagcatggt |
553 |
Q |
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| T |
41101232 |
tgtatgtaggtgagagacagcatggt |
41101207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 436 - 553
Target Start/End: Original strand, 33239584 - 33239701
Alignment:
| Q |
436 |
aactcaccttgtttctttttagcttctattgaaggatttgagaagaaaaagatacatgcacaacttcaattgctcaaaaaggaaggttttgtgaggtgta |
535 |
Q |
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||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||| || |
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| T |
33239584 |
aactcaccttgattctttttagcttctattaaagggtttgagaagaaaaagatacatgcaaaacttcaattgctcaaaactggaggttttgtgaggtata |
33239683 |
T |
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| Q |
536 |
ggtgagagagagcatggt |
553 |
Q |
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| T |
33239684 |
ggtgagatggagcatggt |
33239701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 436 - 553
Target Start/End: Complemental strand, 39577674 - 39577558
Alignment:
| Q |
436 |
aactcaccttgtttctttttagcttctattgaaggatttgagaagaaaaagatacatgcacaacttcaattgctcaaaaaggaaggttttgtgaggtgta |
535 |
Q |
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||||||||||| ||||||| ||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| || |
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| T |
39577674 |
aactcaccttgattctttt-agcttctcttaaagggtttgagaagaaaaagatacatgcaaaacttcaattgctcaaaaatggaggttttgtgaggtata |
39577576 |
T |
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| Q |
536 |
ggtgagagagagcatggt |
553 |
Q |
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||||||| ||||||||| |
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| T |
39577575 |
ggtgagatggagcatggt |
39577558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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