View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_81 (Length: 250)
Name: NF1262_low_81
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_81 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 45 - 231
Target Start/End: Complemental strand, 30908858 - 30908672
Alignment:
| Q |
45 |
attcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtc |
144 |
Q |
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| T |
30908858 |
attcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtc |
30908759 |
T |
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| Q |
145 |
tcaaatatggctcgtcactggtagaaattccaacaccattgaagctggttggcaggcatgttaaattaattacatatacatggttat |
231 |
Q |
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| T |
30908758 |
tcaaatatggctcgtcactggtagaaatgccaacaccattgaagctggttggcaggtatgttaaattaattacatatacatggttat |
30908672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 30918948 - 30918781
Alignment:
| Q |
52 |
tgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaata |
151 |
Q |
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| T |
30918948 |
tgggtatgtgaccggagatctgtactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaata |
30918849 |
T |
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| Q |
152 |
tggctcgtcactggtagaaattccaacaccattgaagctggttggcaggcatgttaaattaattacata |
220 |
Q |
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| T |
30918848 |
tggctgacgaccggtagaaattccaacaccattgaagctggttggcaggcatgtt-aattaattacata |
30918781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 30928828 - 30928627
Alignment:
| Q |
2 |
ataagaaatggattctgctactgattgttctacactgcatagtattcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatt |
101 |
Q |
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| T |
30928828 |
ataagaaatggattcttct---gattgctctacactgcacagcattcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatt |
30928732 |
T |
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| Q |
102 |
tgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaatatggctcgtcactggtagaaattccaacaccattgaagctggttggcaggc |
201 |
Q |
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| T |
30928731 |
tgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggtcctcgccaatggaaatgagaacaccattgaagctggttggcaggc |
30928632 |
T |
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| Q |
202 |
atgtt |
206 |
Q |
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| T |
30928631 |
atgtt |
30928627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 29254311 - 29254394
Alignment:
| Q |
34 |
cactgcatagtattcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgt |
117 |
Q |
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| T |
29254311 |
cactgcacagcattcaattgggtctgtgactggagatagataccatggagcacaggctaccataaatgtgtgggccccccatgt |
29254394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 29254462 - 29254494
Alignment:
| Q |
176 |
aacaccattgaagctggttggcaggcatgttaa |
208 |
Q |
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| T |
29254462 |
aacaccattgaagctggttggcaggcatgttaa |
29254494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 29364704 - 29364776
Alignment:
| Q |
78 |
atggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaat |
150 |
Q |
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| T |
29364704 |
atggagcaaaggctacaataaacgtgtgggccccccaagtggaaagtccaaatgaattcagcttggctcaaat |
29364776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 29234684 - 29234718
Alignment:
| Q |
176 |
aacaccattgaagctggttggcaggcatgttaaat |
210 |
Q |
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| T |
29234684 |
aacaccattgaagctggttggcaggcatgctaaat |
29234718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 29246114 - 29246207
Alignment:
| Q |
73 |
atactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaatatggctcgtcactggt |
166 |
Q |
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| T |
29246114 |
atactatggagcacaggctataataaacgtgtgggccccccatgttgaaagcccaaatgaattcagcttgggtcaaatatggatcgtctctggt |
29246207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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