View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_83 (Length: 250)
Name: NF1262_low_83
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 40567802 - 40567560
Alignment:
| Q |
1 |
tctttgttatgaatgaatccagaatagaatgtgttgttgtactcactcaatgaaatgatcaatataatctctttccnnnnnnnggtactggattttgaac |
100 |
Q |
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| T |
40567802 |
tctttgttatgaatgaatccagaatagagtgtgttgttgtactcactcaatgaaatgatcaatataatctctttcctttgtttggtactggattttgaac |
40567703 |
T |
|
| Q |
101 |
tgcatcttgttccattacttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccgtcaacaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40567702 |
tgcatcttgttccattacttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccatcaacaca |
40567603 |
T |
|
| Q |
201 |
attgttggattccatgcattcattaatatctagagaataattt |
243 |
Q |
| |
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| T |
40567602 |
attgttggattccatgcattcattaatatctagagaataattt |
40567560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 84 - 202
Target Start/End: Complemental strand, 40572306 - 40572188
Alignment:
| Q |
84 |
ggtactggattttgaactgcatcttgttccattacttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcat |
183 |
Q |
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|||||||||||||| |||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||||| || ||||| ||||||| | ||||||| |
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| T |
40572306 |
ggtactggattttggactgcatcctgttccattatttttcccgtctccctcatatccttctgggcataaacaatggtagctcccaggaagatcgatgcat |
40572207 |
T |
|
| Q |
184 |
gttgccccgtcaacacaat |
202 |
Q |
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| T |
40572206 |
gttgcctcctcaacacaat |
40572188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 241
Target Start/End: Complemental strand, 40601300 - 40601143
Alignment:
| Q |
84 |
ggtactggattttgaactgcatcttgttccattacttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcat |
183 |
Q |
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||||||||| || | |||||||| |||||||||| ||||||||||||| ||||||||||| |||||| |||| || |||||||| ||| ||||||||| |
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| T |
40601300 |
ggtactggagttcggactgcatcctgttccattatttttcccgtctccctcatatccttctgggcatgaacaatggtagcttccgggatgattgatgcat |
40601201 |
T |
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| Q |
184 |
gttgccccgtcaacacaattgttggattccatgcattcattaatatctagagaataat |
241 |
Q |
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| T |
40601200 |
ctcgcctcctcaacacagtaattggattccatgcaatcattaacatctaaaggataat |
40601143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 40578725 - 40578611
Alignment:
| Q |
118 |
cttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccgtcaacacaattgttggattccatgc |
217 |
Q |
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||||| ||||||||||||||||||| ||||||||||| || ||||||||||||| ||||||||||| ||||| |||| ||| | ||||||||| ||| |
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| T |
40578725 |
ctttttccgtctccttcatatccttttgggcataaacaatggtagcttccaggaagattgatgcatgtcgccccctcaaaacagtaattggattccttgc |
40578626 |
T |
|
| Q |
218 |
attcattaatatcta |
232 |
Q |
| |
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|||||| || ||||| |
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| T |
40578625 |
attcatcaacatcta |
40578611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 243
Target Start/End: Complemental strand, 40590705 - 40590553
Alignment:
| Q |
91 |
gattttgaactgcatcttgttccattacttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccc |
190 |
Q |
| |
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||||||| | ||||| |||| ||||| | || |||||||| |||| ||||| |||||||||||| || ||||||||||||| ||| |||||||||| |
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| T |
40590705 |
gattttggattgcattttgtgccattcatctttccgtctccctcatgtcctttcgggcataaacaatggtagcttccaggaagattgtcgcatgttgcct |
40590606 |
T |
|
| Q |
191 |
cgtcaacacaattgttggattccatgcattcattaatatctagagaataattt |
243 |
Q |
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| | |||||| | || || ||| |||||||||||||||||| |||||||||| |
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| T |
40590605 |
cttgaacacagtcattagactccgtgcattcattaatatctaaagaataattt |
40590553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 40596862 - 40596748
Alignment:
| Q |
118 |
cttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccgtcaacacaattgttggattccatgc |
217 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||||| || || |||||||||| ||| ||||||| ||||| | || ||| | ||||||||| ||| |
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| T |
40596862 |
ctttttccgtctccttcatatccttttgggcataaacaatggtaacttccaggaagattggtgcatgtcgcccccttaaaacagtcattggattccttgc |
40596763 |
T |
|
| Q |
218 |
attcattaatatcta |
232 |
Q |
| |
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|||||| || ||||| |
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| T |
40596762 |
attcatcaacatcta |
40596748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 2015957 - 2016192
Alignment:
| Q |
5 |
tgttatgaatgaatccagaatagaatgtgttgttgtactcactcaatgaaatgatcaatataatctctttccnnnnnnnggtactggattttgaactgca |
104 |
Q |
| |
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||||||||||| ||| | ||||||||||||||| ||||||||| || |||||||| ||| |||||||| | |||| ||||||||| |||||| |
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| T |
2015957 |
tgttatgaatgcatcaataatagaatgtgttgt---actcactcattgcaatgatcattatgatctcttttcttgatttggtattggattttggactgca |
2016053 |
T |
|
| Q |
105 |
tcttgttccattacttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccgtcaacacaattg |
204 |
Q |
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| |||||||||| | ||||||| ||| |||||| || |||| |||||||| || ||||||||||||| ||| |||||||||| | |||||||| | |
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| T |
2016054 |
ttttgttccattcatcttcccgtttccctcatattctgccggacataaacactggtagcttccaggaagattggtgcatgttgcttcctcaacacagtca |
2016153 |
T |
|
| Q |
205 |
ttggattccatgcattcattaatatctagagaataattt |
243 |
Q |
| |
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||||| ||||| |||||||||||||||| || ||||||| |
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| T |
2016154 |
ttggactccatacattcattaatatctaaaggataattt |
2016192 |
T |
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