View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262_low_85 (Length: 227)

Name: NF1262_low_85
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262_low_85
NF1262_low_85
[»] chr2 (5 HSPs)
chr2 (115-227)||(30919818-30919930)
chr2 (115-227)||(30910369-30910481)
chr2 (115-227)||(30931308-30931420)
chr2 (7-58)||(30919944-30919995)
chr2 (134-224)||(40028197-40028291)
[»] chr8 (8 HSPs)
chr8 (151-221)||(29253772-29253842)
chr8 (160-210)||(29310874-29310924)
chr8 (160-208)||(29245469-29245517)
chr8 (165-209)||(29363713-29363757)
chr8 (152-209)||(29285524-29285581)
chr8 (131-213)||(29215274-29215356)
chr8 (131-208)||(29340289-29340366)
chr8 (160-208)||(29317353-29317401)
[»] chr3 (1 HSPs)
chr3 (115-211)||(43815346-43815442)
[»] chr4 (1 HSPs)
chr4 (136-207)||(43729765-43729836)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 30919930 - 30919818
Alignment:
Q  115 cagagtccggacggcaatattatagactgtattctatctcacaaccaaccagcttttgaccatcctctattgaaaggacaaaaaccattggtatttttcg 214  Q
    ||||||||||||||| |||||||||||||| || | |||||||| |||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||    
T  30919930 cagagtccggacggcgatattatagactgtgttgtgtctcacaaacaaccagcttttgatcatcctttattaaaaggacaaaaaccactggtatttttcg 30919831  T
Q  215 ttaattgaattaa 227  Q
    |||||||||||||    
T  30919830 ttaattgaattaa 30919818  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 30910481 - 30910369
Alignment:
Q  115 cagagtccggacggcaatattatagactgtattctatctcacaaccaaccagcttttgaccatcctctattgaaaggacaaaaaccattggtatttttcg 214  Q
    |||||||| || ||| |||||||||||||| |||| |||||||| |||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||    
T  30910481 cagagtccagatggcgatattatagactgtgttctgtctcacaaacaaccagcttttgatcatcttctgttgaaaggacaaaaactattggtatttttcg 30910382  T
Q  215 ttaattgaattaa 227  Q
    | |||||||||||    
T  30910381 tcaattgaattaa 30910369  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 30931420 - 30931308
Alignment:
Q  115 cagagtccggacggcaatattatagactgtattctatctcacaaccaaccagcttttgaccatcctctattgaaaggacaaaaaccattggtatttttcg 214  Q
    |||||| |||| ||| |||||||||| ||  || | ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| || |    
T  30931420 cagagttcggatggcgatattatagattgcgttgtgtctcataaacaaccagcttttgatcatcctctattgaaaggacaaaaaccattggtattgtttg 30931321  T
Q  215 ttaattgaattaa 227  Q
    |||||||||||||    
T  30931320 ttaattgaattaa 30931308  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 30919995 - 30919944
Alignment:
Q  7 aatataactttcttatgcttatcctaacacactcttaaattaatgattgtgt 58  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30919995 aatataactttcatatgcttatcctaacacactcttaaattaatgattgtgt 30919944  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 40028197 - 40028291
Alignment:
Q  134 ttatagactgtattctatctcacaaccaaccagcttttgaccatcctctatt----gaaaggacaaaaaccattggtatttttcgttaattgaat 224  Q
    |||||||||||||| | |||||||| |||| | ||||||  |||||| || |    ||||||||||||||||||||||| ||| |||||||||||    
T  40028197 ttatagactgtattgtgtctcacaaacaacaaacttttggtcatcctttactgaaagaaaggacaaaaaccattggtatgttttgttaattgaat 40028291  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 29253772 - 29253842
Alignment:
Q  151 tctcacaaccaaccagcttttgaccatcctctattgaaaggacaaaaaccattggtatttttcgttaattg 221  Q
    ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  29253772 tctcataaacaaccagcttttgatcatcctctattgaaaggacaaaaaccattggtatttttggttaattg 29253842  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 29310874 - 29310924
Alignment:
Q  160 caaccagcttttgaccatcctctattgaaaggacaaaaaccattggtattt 210  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  29310874 caaccagcttttgatcatcctttattgaaaggacaaaaaccattggtattt 29310924  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 29245469 - 29245517
Alignment:
Q  160 caaccagcttttgaccatcctctattgaaaggacaaaaaccattggtat 208  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||    
T  29245469 caaccagcttttgatcatcctttattgaaaggacaaaaaccattggtat 29245517  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 29363713 - 29363757
Alignment:
Q  165 agcttttgaccatcctctattgaaaggacaaaaaccattggtatt 209  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  29363713 agcttttgatcatcctctattgaaaggacaaaaaccattggtatt 29363757  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 29285524 - 29285581
Alignment:
Q  152 ctcacaaccaaccagcttttgaccatcctctattgaaaggacaaaaaccattggtatt 209  Q
    ||||||| |||||||||||||| |||| | |||||||||| |||||||||||||||||    
T  29285524 ctcacaaacaaccagcttttgatcatcatttattgaaagggcaaaaaccattggtatt 29285581  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 29215356 - 29215274
Alignment:
Q  131 atattatagactgtattctatctcacaaccaaccagcttttgaccatcctctattgaaaggacaaaaaccattggtatttttc 213  Q
    |||| ||||| ||| || ||||||| || ||||| |||||||| ||||||   |||| |||||||||||||||||||||||||    
T  29215356 atatcatagattgtgttgtatctcataaacaaccggcttttgatcatcctacgttgagaggacaaaaaccattggtatttttc 29215274  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 29340289 - 29340366
Alignment:
Q  131 atattatagactgtattctatctcacaaccaaccagcttttgaccatcctctattgaaaggacaaaaaccattggtat 208  Q
    |||| |||||||||||| |  |||| || |||| ||||||||| |||||  |||||||||| ||||||||||||||||    
T  29340289 atataatagactgtattttgactcataaacaactagcttttgatcatcccttattgaaagggcaaaaaccattggtat 29340366  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 29317353 - 29317401
Alignment:
Q  160 caaccagcttttgaccatcctctattgaaaggacaaaaaccattggtat 208  Q
    |||| ||||||||| |||||  |||||||||||||||||||||||||||    
T  29317353 caactagcttttgatcatcccttattgaaaggacaaaaaccattggtat 29317401  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 43815442 - 43815346
Alignment:
Q  115 cagagtccggacggcaatattatagactgtattctatctcacaaccaaccagcttttgaccatcctctattgaaaggacaaaaaccattggtatttt 211  Q
    |||||||| |||||  |||| ||||| ||| || || | || || |||||||||||||| |||||| |||||||||| |||||||||||||||||||    
T  43815442 cagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcctttattgaaagggcaaaaaccattggtatttt 43815346  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 43729836 - 43729765
Alignment:
Q  136 atagactgtattctatctcacaaccaaccagcttttgaccatcctctattgaaaggacaaaaaccattggta 207  Q
    ||||| |||||| |||||||  | |||||||||||||||||||| ||| | |||||||||||||||||||||    
T  43729836 atagattgtattatatctcatcaacaaccagcttttgaccatccactactcaaaggacaaaaaccattggta 43729765  T

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