View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262_low_87 (Length: 215)

Name: NF1262_low_87
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262_low_87
NF1262_low_87
[»] chr3 (16 HSPs)
chr3 (1-164)||(23500783-23500946)
chr3 (1-164)||(23449020-23449183)
chr3 (8-164)||(23406506-23406662)
chr3 (3-164)||(23353652-23353813)
chr3 (1-164)||(23465153-23465316)
chr3 (1-157)||(23435221-23435377)
chr3 (1-164)||(23455784-23455947)
chr3 (1-164)||(23441630-23441793)
chr3 (1-164)||(23474162-23474325)
chr3 (1-164)||(23388139-23388302)
chr3 (9-162)||(23480518-23480671)
chr3 (38-162)||(36034062-36034186)
chr3 (38-162)||(36017156-36017280)
chr3 (1-162)||(36004456-36004617)
chr3 (1-162)||(36025217-36025378)
chr3 (71-162)||(21088395-21088486)
[»] scaffold0201 (1 HSPs)
scaffold0201 (1-164)||(13327-13490)
[»] scaffold0570 (2 HSPs)
scaffold0570 (1-161)||(9853-10013)
scaffold0570 (57-108)||(3482-3533)
[»] chr4 (1 HSPs)
chr4 (1-162)||(12894815-12894976)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 23500783 - 23500946
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23500783 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 23500882  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 164  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23500883 ttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 23500946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 23449020 - 23449183
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
23449020 ttacctataatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatcttgc 23449119  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 164  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23449120 ttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 23449183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 23406506 - 23406662
Alignment:
8 taatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatgtt 107  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
23406506 taattttgagagtcccaaccaaccaaattagctgcctcagtgagagaatctttccatttcttcaacttgtcattattgtgctttaaatctcgcttatgtt 23406605  T
108 tcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 164  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
23406606 ttgcaaaggcttgcttgtaactcccggtctgcttcctcacatttgatggatctatgt 23406662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 23353652 - 23353813
Alignment:
3 acctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgctt 102  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||    
23353652 acctataatttcgagagtcccaaccaactaaattagctgcctcggtgagagcagctttccatttctccaacttgtcattattgtgcttcaaatctcgctt 23353751  T
103 atgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 164  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23353752 atgtttttcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 23353813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 23465153 - 23465316
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| ||||||||||||||||||||||| ||||||||||| || ||||||| | |||||||||||| |||||| || |||||||||||||||| ||||    
23465153 ttacctataatttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttattgtgcttcaaatttcgc 23465252  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 164  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23465253 ttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 23465316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 23435221 - 23435377
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| |||||| |||||||||||||||| |||||||||||||| |||||||   |||||||||| | |||||||||||||||||||||||||||||||    
23435221 ttacctataattttgagagtcccaaccaactaaattagctgcctcagtgagagcggctttccatttatgcaacttgtcattattgtgcttcaaatctcgc 23435320  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgga 157  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
23435321 ttatgttttgcaaatgcttgcttgtaactcccggtctgcttcctcacatgtgatgga 23435377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 23455784 - 23455947
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| |||||| |||||||||| ||||| |||||||||||||| ||||||||  |||||||||||| ||||||| |||||||||||||||||||| ||    
23455784 ttacctataattttgagagtcccatccaactaaattagctgcctcagtgagagaggctttccatttctccaacttggcattattgtgcttcaaatcttgc 23455883  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 164  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
23455884 ttatgttttgcaaaggcttgcttgtaactcccggtttgcttcctcacatgtgatggatcaatgt 23455947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 23441630 - 23441793
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | ||||||||||| ||  |||||||||||||||  |||||||||||||    
23441630 ttacctgtaattttgagagtcccaaccaactaaactagctgcctcagtgagtgcatctttccattcctgtaacttgtcattattgctcttcaaatctcgc 23441729  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 164  Q
    |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||    
23441730 ttatgttttgcgaaggcttgcttgtaactcccagtctgcttcctcacatgtgatggatctatgt 23441793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 23474162 - 23474325
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | ||||||||||| ||  |||||||||||||||  |||||||||||||    
23474162 ttacctgtaattttgagagtcccaaccaactaaactagctgcctcagtgagtgcatctttccattcctgtaacttgtcattattgctcttcaaatctcgc 23474261  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 164  Q
    |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||    
23474262 ttatgttttgcgaaggcttgcttgtaactcccagtctgcttcctcacatgtgatggatctatgt 23474325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 23388139 - 23388302
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||  || ||||||||||||| ||| ||||||||||||  ||||   ||||||||| ||  ||||||||||||||| ||||||||||||||    
23388139 ttacctgtaattctgaaagtcccaaccaactaaactagctgcctcggcaagagcggctttccattcctgtaacttgtcattattgagcttcaaatctcgc 23388238  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 164  Q
     ||||||| |  |||||||||| ||||||||| |||||||||||||||||||| ||||||||||    
23388239 atatgttttgtgaaggcttgctcgtaactcccagtctgcttcctcacatgtgagggatctatgt 23388302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 23480518 - 23480671
Alignment:
9 aatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatgttt 108  Q
    ||||| || ||||||||||  | ||| |||||||||| |||||||   ||||||||| ||  |||||||||||||||  |||||||||||||||||||||    
23480518 aattttgaaagtcccaaccgcctaaactagctgcctcagtgagagcggctttccattcctgtaacttgtcattattgctcttcaaatctcgcttatgttt 23480617  T
109 cgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctat 162  Q
     ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||    
23480618 tgcaaaagcttgctcgtaactcccggtctggttcctcacatgtgatggatctat 23480671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 36034062 - 36034186
Alignment:
38 gctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatgtttcgcaaaggcttgcttgtaactcccggtct 137  Q
    ||||| || ||||||| ||||||| |||||| ||||||||| || ||||||||||||| | ||||||| || |||||||||||||||||||||||  | |    
36034062 gctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttcaaattttgcttatgctttgcaaaggcttgcttgtaactcccaattt 36034161  T
138 gcttcctcacatgtgatggatctat 162  Q
    | |||||||||||||||||||||||    
36034162 gattcctcacatgtgatggatctat 36034186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 36017156 - 36017280
Alignment:
38 gctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatgtttcgcaaaggcttgcttgtaactcccggtct 137  Q
    ||||| || ||||||| ||||||| |||||| ||||||||| || ||||||||||||| | ||||||  || |||||||||||||||||||||||  | |    
36017156 gctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttcaaattttgcttattctttgcaaaggcttgcttgtaactcccaattt 36017255  T
138 gcttcctcacatgtgatggatctat 162  Q
    | |||||||||||||||||||||||    
36017256 gattcctcacatgtgatggatctat 36017280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 36004456 - 36004617
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||| |||||| ||| ||  | ||||| ||||| || || |||| ||||||||||||||| ||| | || || || ||||||||||||||     
36004456 ttacctgtaattttgagagtgccaccctgctaaattggctgcttcagttagagcatctttccatttctttaacatttctttgttctgcttcaaatctcgt 36004555  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctat 162  Q
      |||||| ||||||||||||   ||||| ||  | || |||||||||||||||||||||||    
36004556 gcatgttttgcaaaggcttgcccataacttccattttgattcctcacatgtgatggatctat 36004617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 36025217 - 36025378
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||| |||||||| |||||| ||| ||| | ||||| || || |||||||||| |||||||||||| | ||| ||||| ||  | |||||||||||| |     
36025217 ttacttgtaattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgt 36025316  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctat 162  Q
    | ||||||  |||| |||  | | ||||| ||  |||| |||||||||||||||||||||||    
36025317 tcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctat 36025378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 21088395 - 21088486
Alignment:
71 aacttgtcattattgtgcttcaaatctcgcttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctat 162  Q
    ||||||||||||| || ||| ||||||||| |||| ||  |||||| || |||||||||||  ||||||||| ||| |||| ||||||||||    
21088395 aacttgtcattatcgttctttaaatctcgcatatgcttttcaaaggttttcttgtaactccaagtctgcttcttcatatgtaatggatctat 21088486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 13327 - 13490
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| ||||||||||||||||||||||| ||||||||||| || ||||||| | |||||||||||| |||||| || |||||||||||||||||||||    
13327 ttacctataatttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttattgtgcttcaaatctcgc 13426  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgt 164  Q
    |||||||| ||||||||||||| |||||| || |||||||||||||||| || |||||||||||    
13427 ttatgttttgcaaaggcttgctggtaacttccagtctgcttcctcacatttgctggatctatgt 13490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 10013 - 9853
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||   ||||||| |||||||||||||||||||||  |||||||||||||    
10013 ttacctataatttcgagagtcccaaccaactaaattagctgcctcggtgagagcggctttccagttcttcaacttgtcattattgctcttcaaatctcgc 9914  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatcta 161  Q
    ||||||||  |||||||||||| |||||| || |||||||| ||||||| || ||||||||    
9913 ttatgtttttcaaaggcttgctcgtaacttccagtctgctttctcacatttgctggatcta 9853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 3533 - 3482
Alignment:
57 ctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatgttt 108  Q
    |||||||||||| |||||||||||||||||||||||  |||||| |||||||    
3533 ctttccatttctgcaacttgtcattattgtgcttcagttctcgcctatgttt 3482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 12894976 - 12894815
Alignment:
1 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 100  Q
    ||||||||||||| |||||| ||| ||| | ||||| ||||| ||  |||||| |||||||||||| |  ||| | || ||   ||||||||||||| ||    
12894976 ttacctgtaattttgagagtgccacccagctaaattggctgcttcaatgagagcatctttccatttttgtaacatatctttgccgtgcttcaaatcttgc 12894877  T
101 ttatgtttcgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctat 162  Q
    |  ||||| |||||||||||  |||| ||||| || || |||||||||||||||||||||||    
12894876 tcgtgttttgcaaaggcttgactgtacctccctgtttgattcctcacatgtgatggatctat 12894815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University