View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_90 (Length: 212)
Name: NF1262_low_90
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 29199669 - 29199789
Alignment:
| Q |
1 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagnnnnnnncctctgctacttcaaattcaggtctgctttcgatgtttctgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29199669 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagtttttttcctctgctacttcaaattcaggcctgctttcgatgtttctgtt |
29199768 |
T |
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| Q |
101 |
tagccatattgttggagatgc |
121 |
Q |
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||||||| |||| ||| |||| |
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| T |
29199769 |
tagccattttgtaggatatgc |
29199789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 19768151 - 19768265
Alignment:
| Q |
1 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagnnnnnnncct---ctgctacttcaaattcaggtctgctttcgatgtttct |
97 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||| |
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| T |
19768151 |
cgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagtttttttcctctgctgctacttcaaattcaggtctgccttcaatgtttct |
19768250 |
T |
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| Q |
98 |
gtttagccatattgt |
112 |
Q |
| |
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|||||||||| |||| |
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| T |
19768251 |
gtttagccattttgt |
19768265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 12572461 - 12572348
Alignment:
| Q |
2 |
gtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagnnnnnnncct---ctgctacttcaaattcaggtctgctttcgatgtttctg |
98 |
Q |
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||||| ||| |||||||||| || ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||| || ||||| |
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| T |
12572461 |
gtggcagtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctt |
12572362 |
T |
|
| Q |
99 |
tttagccatattgt |
112 |
Q |
| |
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||||||||| |||| |
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| T |
12572361 |
tttagccattttgt |
12572348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 13548925 - 13548812
Alignment:
| Q |
2 |
gtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagnnnnnnncct---ctgctacttcaaattcaggtctgctttcgatgtttctg |
98 |
Q |
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||||| ||| |||||||||| || ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||| || ||||| |
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| T |
13548925 |
gtggcagtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctt |
13548826 |
T |
|
| Q |
99 |
tttagccatattgt |
112 |
Q |
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||||||||| |||| |
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| T |
13548825 |
tttagccattttgt |
13548812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 22082844 - 22082958
Alignment:
| Q |
1 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag---nnnnnnncctctgctacttcaaattcaggtctgctttcgatgtttct |
97 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| ||| ||| |||||||| |
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| T |
22082844 |
cgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagttttttttctccgctgctacttcaaattcaggtatgccttcaatgtttct |
22082943 |
T |
|
| Q |
98 |
gtttagccatattgt |
112 |
Q |
| |
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|||| ||||| |||| |
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| T |
22082944 |
gttttgccattttgt |
22082958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37617131 - 37617082
Alignment:
| Q |
1 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag |
50 |
Q |
| |
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|||||||||| | ||||||||| ||||||||||||||||||||||||||| |
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| T |
37617131 |
cgtggctgtcagcgtgtgttatactgcattatgtgttttgtttatgtaag |
37617082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 4351638 - 4351752
Alignment:
| Q |
1 |
cgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagnnnnnnncct---ctgctacttcaaattcaggtctgctttcgatgtttct |
97 |
Q |
| |
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|||||| ||| |||||||||| || ||||| | ||||||||||||||||| ||| ||||||||||||||| |||||||| |||||| ||||| |
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| T |
4351638 |
cgtggcagtcagtgtgtgttacgcggcattgtttgttttgtttatgtaagttttgttcctgcgctgctacttcaaatttaggtctgccttcgatttttct |
4351737 |
T |
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| Q |
98 |
gtttagccatattgt |
112 |
Q |
| |
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||||||||| |||| |
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| T |
4351738 |
ttttagccattttgt |
4351752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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