View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_92 (Length: 209)
Name: NF1262_low_92
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_92 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 29199789 - 29199599
Alignment:
| Q |
2 |
gcatctccaacaatatggctaaacagaaacatcgaaagcagacctgaatttgaagtagcagaggnnnnnnncttacataaacaaaacacataatgcagca |
101 |
Q |
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|||| ||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29199789 |
gcatatcctacaaaatggctaaacagaaacatcgaaagcaggcctgaatttgaagtagcagaggaaaaaaacttacataaacaaaacacataatgcagca |
29199690 |
T |
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| Q |
102 |
taacacacaccgacagccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaact |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29199689 |
taacacacaccgacagccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaact |
29199599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 19768265 - 19768134
Alignment:
| Q |
11 |
acaatatggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacac |
107 |
Q |
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|||| |||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
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| T |
19768265 |
acaaaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcagaggaaaaaaacttacataaacaaaacacataatgcagtataacac |
19768166 |
T |
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| Q |
108 |
acaccgacagccacgaagaaaaagctccctca |
139 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
19768165 |
acactgacagccacgaagaaaaagctccctca |
19768134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 12572348 - 12572461
Alignment:
| Q |
11 |
acaatatggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacac |
107 |
Q |
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| T |
12572348 |
acaaaatggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggcaaaaaacttacataaacaaaacacacaatgccgcgtaacac |
12572447 |
T |
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| Q |
108 |
acaccgacagccac |
121 |
Q |
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|||| ||| ||||| |
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| T |
12572448 |
acactgactgccac |
12572461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 13548812 - 13548925
Alignment:
| Q |
11 |
acaatatggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacac |
107 |
Q |
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| T |
13548812 |
acaaaatggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggcaaaaaacttacataaacaaaacacacaatgccgcgtaacac |
13548911 |
T |
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| Q |
108 |
acaccgacagccac |
121 |
Q |
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|||| ||| ||||| |
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| T |
13548912 |
acactgactgccac |
13548925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 4351752 - 4351575
Alignment:
| Q |
11 |
acaatatggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacac |
107 |
Q |
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|||| ||||||||| ||||| |||||| |||||||| ||||||||||||||| ||| ||||||||||||||||| | ||||| || |||||| |
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| T |
4351752 |
acaaaatggctaaaaagaaaaatcgaaggcagacctaaatttgaagtagcagcgcaggaacaaaacttacataaacaaaacaaacaatgccgcgtaacac |
4351653 |
T |
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| Q |
108 |
acaccgacagccacgaagaaaaa-gctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctt |
184 |
Q |
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|||| ||| |||||||| ||||| |||||||||||||||||| |||||||||||| || ||||| || |||||||||| |
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| T |
4351652 |
acactgactgccacgaaaaaaaaagctccctcacaaacgattcaagatctaacaatgcccatccgaaattgaatgctt |
4351575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 22082958 - 22082827
Alignment:
| Q |
11 |
acaatatggctaaacagaaacatcgaaagcagacctgaatttgaagtagcagaggnnnnnnn---cttacataaacaaaacacataatgcagcataacac |
107 |
Q |
| |
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|||| ||||| |||||||||||| ||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
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| T |
22082958 |
acaaaatggcaaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagaaaaaaaacttacataaacaaaacacataatgcagtataacac |
22082859 |
T |
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| Q |
108 |
acaccgacagccacgaagaaaaagctccctca |
139 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
22082858 |
acactgacagccacgaagaaaaagctccctca |
22082827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 37617082 - 37617148
Alignment:
| Q |
73 |
cttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctca |
139 |
Q |
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||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |
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| T |
37617082 |
cttacataaacaaaacacataatgcagtataacacacgctgacagccacgaagaaaaagctccctca |
37617148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 51389747 - 51389855
Alignment:
| Q |
74 |
ttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaa |
173 |
Q |
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||||||||||||| |||| || ||||||||||| ||||||| |||||| |||||| || |||||||||||||||| || ||| ||||||| ||||| || |
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| T |
51389747 |
ttacataaacaaaccacacaacgcagcataacatacaccgatagccacaaagaaatag-tccctcacaaacgattcaaagtcttacaaagcccatccgaa |
51389845 |
T |
|
| Q |
174 |
tttgaatgct |
183 |
Q |
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|| ||||||| |
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| T |
51389846 |
ttcgaatgct |
51389855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 15387 - 15444
Alignment:
| Q |
127 |
aaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctt |
184 |
Q |
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|||||||||||||||||||||| |||||||||||| || ||||| || || ||||||| |
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| T |
15387 |
aaaagctccctcacaaacgattcaagatctaacaatgcccatccgaaattaaatgctt |
15444 |
T |
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