View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_low_94 (Length: 207)
Name: NF1262_low_94
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_94 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 28925899 - 28925789
Alignment:
| Q |
1 |
aagtctagggaggactggttttccccctccatttcctttatg-gatgctactattttggaattaacattatacattgctgaagagattgttatttatttt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28925899 |
aagtctagggaggactggttttccccctccatttcctttatgagatgctactattttggaattaagattatacattgctgaagagattgttatttatttt |
28925800 |
T |
|
| Q |
100 |
tacacaatttt |
110 |
Q |
| |
|
||||||||||| |
|
|
| T |
28925799 |
tacacaatttt |
28925789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29929978 - 29930087
Alignment:
| Q |
1 |
aagtctagggaggactggttttccccctccatttcctttatg-gatgctactattttggaattaacattatacattgctgaagagattgttatttatttt |
99 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
29929978 |
aagtctagggaggattggttttccccctccaattcctt-atgagatgctagtattttggaattaacattatacattgttgaatagattgttatttatttt |
29930076 |
T |
|
| Q |
100 |
tacacaatttt |
110 |
Q |
| |
|
||| ||||||| |
|
|
| T |
29930077 |
tacgcaatttt |
29930087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29365710 - 29365607
Alignment:
| Q |
1 |
aagtctagggaggactggtttt--ccccctccatttcctttatg-gatgctactattttggaattaacattatacattgctgaagagattgttatttatt |
97 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29365710 |
aagtctatggaggacttgtttttcccccctccagttcctttatgagatgctagaattttggaattaacattatacattgttgaagagattgttatttatt |
29365611 |
T |
|
| Q |
98 |
ttta |
101 |
Q |
| |
|
|||| |
|
|
| T |
29365610 |
ttta |
29365607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 24263044 - 24262934
Alignment:
| Q |
1 |
aagtctagggaggactggttttccccc-tccatttcctttatg-gatgctactattttggaattaacattatacattgctgaagagattgttatttattt |
98 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| ||| ||||||| |||||||||||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
24263044 |
aagtctagggaggactggttttcccccctccaattcctt-atgagatgctagtattttggaattaacattatacattgtagaagatatcattatttattt |
24262946 |
T |
|
| Q |
99 |
ttacacaatttt |
110 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24262945 |
ttacacaatttt |
24262934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29898780 - 29898891
Alignment:
| Q |
1 |
aagtctagggaggactggttttccccc--tccatttcctttatg-gatgctactattttggaattaacattatacattgctgaagagattgttatttatt |
97 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| ||| ||| ||| |||||||||||||| |||||||||||| ||| |||| |||||||||| |
|
|
| T |
29898780 |
aagtctagggaggactggttttccccccttccaattcctt-atgagattctagtattttggaattaaaattatacattgcagaatagatagttatttatt |
29898878 |
T |
|
| Q |
98 |
tttacacaatttt |
110 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29898879 |
tttacacaatttt |
29898891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University