View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1263-Insertion-1 (Length: 916)
Name: NF1263-Insertion-1
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 370
Target Start/End: Complemental strand, 5481457 - 5481095
Alignment:
| Q |
8 |
gttacaggccaaaaggttgttcttgagacaaagaaattagttggaaaagatggatttttaagtgctttagaagggatgaatgaagctttgaataaggtca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5481457 |
gttacaggccaaaaggttgttcttgagacaaagaaattagttggaaaagatggatttttaagtgctttagaagggatgaatgaagctttgaataaggtaa |
5481358 |
T |
|
| Q |
108 |
aaaatgatggtgtgttgaatggagctaaaaattggttagctactatgttcaaaggtaaaaaggatgctaaaatttactctattgctggatcaccaaggtt |
207 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5481357 |
aaaatgatggtgtgttgaatggagctaaagattggttagctactatgttcaatggtaaaaaggatgctaaaatttactctattgctggatcaccaaggtt |
5481258 |
T |
|
| Q |
208 |
tgaggtttatagtattgattttggatttggaaagcctaagaaagttgatatgacttcaactgataaaacaggagcattttctattagtgaaagtaggaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5481257 |
tgaggtttatagtattgattttggatttggaaagcctaaaaaagttgatatgacttcaactgataaaacaggagcattttctattagtgaaagtaggaat |
5481158 |
T |
|
| Q |
308 |
aacaatggtggaattgagattggtttggctttaggtaaggaagagatggaagctttytctacc |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
5481157 |
aacaatggtggaattgagattggtttggctttaggtaaggaagaaatggaagctttttctacc |
5481095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 5525689 - 5526026
Alignment:
| Q |
30 |
ttgagacaaagaaattagttggaaaagatggatttttaagtgctttagaagggatgaatgaagctttgaataaggtcaaaaatgatggtgtgttgaatgg |
129 |
Q |
| |
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||||||||||||| |||||||||||| |||||||| ||| |||||||||||| || ||| |||||||||||| || ||| ||| ||| ||||| ||||| |
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|
| T |
5525689 |
ttgagacaaagaacttagttggaaaaaatggatttgtaaatgctttagaaggaataaataaagctttgaatagtgtgaaagatgttggcgtgttaaatgg |
5525788 |
T |
|
| Q |
130 |
agctaaaaattggttagctactatgttcaaaggtaaaaaggatgctaaaatttactctattgctggatcaccaaggtttgaggtttatagtattgatttt |
229 |
Q |
| |
|
|||| |||||||| | ||| ||||| | || || ||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5525789 |
agctgaaaattgggtttctaatatgtctagtgg---aatggaaggtaaaatttactctattgctggatcaccaaggtttgagttttatagtattgatttt |
5525885 |
T |
|
| Q |
230 |
ggatttggaaagcctaagaaagttgatatgacttcaactgataaaacaggagcattttctattagtgaaagtaggaataacaatggtggaattgagattg |
329 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5525886 |
ggatttggaaagccaaaaaaagttgatatgacttcaactgataaatcaggagcattttctcttagtgaaagtaggaataacaatggtggaattgagattg |
5525985 |
T |
|
| Q |
330 |
gtttggctttaggtaaggaagagatggaagctttytctacc |
370 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
5525986 |
gtttggctttaagtaaggaagagatggaagctttttctacc |
5526026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 370
Target Start/End: Original strand, 5494742 - 5495097
Alignment:
| Q |
12 |
caggccaaaaggttgttcttgagacaaagaaattagttggaaaagatggatttttaagtgctttagaagggatgaatgaagctttgaataaggtcaaaaa |
111 |
Q |
| |
|
|||| |||||| |||| ||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| ||| |||||||||||| || ||| | |
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|
| T |
5494742 |
caggacaaaagattgtgtttgagacaaagaacttagttggaaaaaatggatttttaaatgctttagaagggataaataaagctttgaatagtgtgaaaga |
5494841 |
T |
|
| Q |
112 |
tgatggtgtgttgaatggagctaaaaattggttagctactatgttcaaaggtaaaaaggatgctaaaatttactctattgctggatcaccaaggtttgag |
211 |
Q |
| |
|
|| ||| ||||| ||||||||| |||||||| | ||| ||||| | || | || | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5494842 |
tgttggagtgttaaatggagctgaaaattgggtttctaatatgtatagtgg---atttgaaggtaaaatttactctattgctggatcaccaaggtttgag |
5494938 |
T |
|
| Q |
212 |
gtttatagtattgattttggatttggaaagcctaagaaagttgatatgacttcaactgataaaacaggagcattttctattagtgaaagtaggaataaca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
5494939 |
ttttatagtattgattttggatttggaaagccaaaaaaagttgacatgacttcaactgataaaacaggagcattttctcttggtgaaagtaggaataaca |
5495038 |
T |
|
| Q |
312 |
atggtggaattgagattggtttggctttaggtaaggaagagatggaagctttytctacc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |
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|
| T |
5495039 |
atggtggaattgagattggtttggctttaaataaggaagagttggaagctttttctacc |
5495097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 552 - 685
Target Start/End: Complemental strand, 5480956 - 5480825
Alignment:
| Q |
552 |
cttacaaaatttgtaacatcacaaatatcattataataatataa-catctagagactt--cttagccagagagtactctttggaagatgcattctattct |
648 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
5480956 |
cttacaaaatttgtaacatcacaaatataattataataatgtaagcatctagagactctacttagccagagagtactctttggaagatgcattctatt-- |
5480859 |
T |
|
| Q |
649 |
atttatttattctaatttatttgtgtaatttaagttt |
685 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
5480858 |
---tattgattctaatttatttgtgtaatttaagttt |
5480825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 185 - 339
Target Start/End: Complemental strand, 4981913 - 4981759
Alignment:
| Q |
185 |
tctattgctggatcaccaaggtttgaggtttatagtattgattttggatttggaaagcctaagaaagttgatatgacttcaactgataaaacaggagcat |
284 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||||||| |||||||||||| || || ||||||||||||||| | ||||| | ||||||||||||||| | |
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|
| T |
4981913 |
tctattgccgggtcacctaggtttgatgtttatagttttgattttggatggggtaaacctaagaaagttgatgttacttctattgataaaacaggagctt |
4981814 |
T |
|
| Q |
285 |
tttctattagtgaaagtaggaataacaatggtggaattgagattggtttggcttt |
339 |
Q |
| |
|
||||| || || | ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
4981813 |
tttctctttcggagaataggaataatgatggtggaattgagattggtttggcttt |
4981759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 737 - 890
Target Start/End: Complemental strand, 5480768 - 5480613
Alignment:
| Q |
737 |
gattctcatgaactggtgcgtacaaattgcacaaccatcag-tgcaaaa-gctctcatcaaatggcgtttaaagaggctgttttaacgatttgaactcgt |
834 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||| | ||||| | ||||| | |||||| | ||||| |||||||||||||| ||||||||| || |
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|
| T |
5480768 |
gattctcatgaactggtgcatacaaatttcacaatcatagggtgcaagatgctctgaccaaatgccatttaaggaggctgttttaacaatttgaacttgt |
5480669 |
T |
|
| Q |
835 |
ggcaataacattaccattgcatcaaggctcgtaacgagtgcattagagatgaacaa |
890 |
Q |
| |
|
|||||||| ||||||| | | |||||||||||| ||||||||| ||||||||||| |
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|
| T |
5480668 |
tgcaataaccttaccatagtaacaaggctcgtaatgagtgcattcgagatgaacaa |
5480613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 4977803 - 4977699
Alignment:
| Q |
185 |
tctattgctggatcaccaaggtttgaggtttatagtattgattttggatttggaaagcctaagaaagttgatatgacttcaactgataaaacaggagcat |
284 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||| |||||||||||| || || ||||||||||||||| | ||||| | ||||||||||||||| | |
|
|
| T |
4977803 |
tctattgcaggatcacctagatttgaggtttatagttttgattttggatggggtaaacctaagaaagttgatgttacttctattgataaaacaggagctt |
4977704 |
T |
|
| Q |
285 |
tttct |
289 |
Q |
| |
|
||||| |
|
|
| T |
4977703 |
tttct |
4977699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 197 - 339
Target Start/End: Complemental strand, 4994546 - 4994404
Alignment:
| Q |
197 |
tcaccaaggtttgaggtttatagtattgattttggatttggaaagcctaagaaagttgatatgacttcaactgataaaacaggagcattttctattagtg |
296 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||||| | || |||||||||||||||||| | ||||| ||||| | ||||||| |||| | || | |
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|
| T |
4994546 |
tcacctaggtttgaggtgtatagttttgattttgggtggggtaagcctaagaaagttgatgttacttcggttgatagaccaggagctttttatctttcgg |
4994447 |
T |
|
| Q |
297 |
aaagtaggaataacaatggtggaattgagattggtttggcttt |
339 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
4994446 |
gaaataggaataatgatggtggaattgagattggtttgacttt |
4994404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 5481037 - 5480988
Alignment:
| Q |
435 |
ggaagcataattgtttgaatatgattcaggcaatttgtgttagggagaaa |
484 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
5481037 |
ggaagcatgattgtttgaatatgattcaggtattttgtgttagggagaaa |
5480988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 4297742 - 4297693
Alignment:
| Q |
206 |
tttgaggtttatagtattgattttggatttggaaagcctaagaaagttga |
255 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| || ||||||||||| |
|
|
| T |
4297742 |
tttgaggtttatagtactgattttggatgtggaaaaccaaagaaagttga |
4297693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 4261030 - 4261079
Alignment:
| Q |
206 |
tttgaggtttatagtattgattttggatttggaaagcctaagaaagttga |
255 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| || || |||||||| |
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|
| T |
4261030 |
tttgaggtttatagtactgattttggatgtggaaaaccaaaaaaagttga |
4261079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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