View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263-Insertion-3 (Length: 798)
Name: NF1263-Insertion-3
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 622; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 8 - 712
Target Start/End: Complemental strand, 39662906 - 39662201
Alignment:
| Q |
8 |
ttaaatgcttaatttccaagctattagatgtttatgttatgtatattaccgtgtcttgctctgcttgccttcttttcattcataggagtaaaaggtaaag |
107 |
Q |
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| T |
39662906 |
ttaaatgcttaatttccaagctattagatgtttgcgtcatgtatattaccgtgtcttgctctgcttgccttcttttcattcataggagtaaaaggtaaag |
39662807 |
T |
|
| Q |
108 |
gttctttgtagacgaaaagagtctttatctaagtctgcgagagaaaagtatttctttcaaatgaagtgctatgattggtctcgggaatcatatgcaatcc |
207 |
Q |
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| T |
39662806 |
gttctttgtagacgaaaagagtctttatctaagtctgcgagagaaaagtatttctttgaaatgaagtgctatgattggtctcgggaatcatatgcaatcc |
39662707 |
T |
|
| Q |
208 |
tttgcttccccttgactgcacaagctcaggagatagaggaaacattttgttcaatttgtgctgattgtacttcccaaaccctgtctatcaatatagacaa |
307 |
Q |
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| T |
39662706 |
tttgcttccccttgactgcacaagctcaggagatagaggaaacattttgttcaatttgtgctgattgtacttcccaaaccctgtctatcaatatagacaa |
39662607 |
T |
|
| Q |
308 |
catataaagttcctctgagcagctcagcatttcacctgaccctttcttatacttccttctgggttagaaattttacaaatgcagtttcaatgttaagcca |
407 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39662606 |
catataaagttcctctgagcagctcaacatttcacctgaccctttcatatacttccttctgggttagaaattttacaaatgcagtttcattgttaagcca |
39662507 |
T |
|
| Q |
408 |
ccaatatggattgatttgattaacttgcatggaaatcatttttagaattctaaaacaatttgtagagttttaccnnnnnnnnggattcagcaacatctag |
507 |
Q |
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| T |
39662506 |
ccaatatgggttgatttgattaacttgcatgtaaatcatttttagaattctaaaacagtttgtagagttttaccttttttttggattcagcaacatctag |
39662407 |
T |
|
| Q |
508 |
ttgtggaggttaattttctttttgacttgcagattgcatgcagagactatcctcattcccggcatctattgttgtcaatattcctcttctttaatataca |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39662406 |
ttgtggaggttaattttctttttgacttgcagattgcatgcagagactatcctcattcccggcatctatttttgtcaatattcctcttctttaatataca |
39662307 |
T |
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| Q |
608 |
cgtagaatttgttttataggagtcatgtcatattttatttttctttctaaaataacattgtttccgagaagaa-ggttgaaatggtcagttttgtcattg |
706 |
Q |
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| T |
39662306 |
catagaatttgttttataggagtcatgtcatattttatttttctttctaaaataacattgtttccgagaagaagggttgaaatggtcaattttgtcattg |
39662207 |
T |
|
| Q |
707 |
tagaag |
712 |
Q |
| |
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|||||| |
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| T |
39662206 |
tagaag |
39662201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 494 - 574
Target Start/End: Complemental strand, 39652868 - 39652788
Alignment:
| Q |
494 |
tcagcaacatctagttgtggaggttaattttctttttgacttgcagattgcatgcagagactatcctcattcccggcatct |
574 |
Q |
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| T |
39652868 |
tcagcaacatctagttgtggatgttaattttgtttttgacttgcagattgcatgcagagactatcctcattctcggcatct |
39652788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 719 - 798
Target Start/End: Complemental strand, 39661986 - 39661907
Alignment:
| Q |
719 |
atgtgttttgttatcttctgtg-cctctaactgctgttctcatgtaggatgcctgagttatattatatgcatttagatttt |
798 |
Q |
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| T |
39661986 |
atgtgttttgttttcttctgtggcctctaactgctgttctcatgtaggatgcctgag-tatattatatgcatttagatttt |
39661907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 492 - 574
Target Start/End: Complemental strand, 39673519 - 39673437
Alignment:
| Q |
492 |
attcagcaacatctagttgtggaggttaattttctttttgacttgcagattgcatgcagagactatcctcattcccggcatct |
574 |
Q |
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| T |
39673519 |
attcagtagcatatagctgtggaggttaattttgtttttgacttgcagattgcatgcagagactatcctcattctcggcatct |
39673437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 2984330 - 2984386
Alignment:
| Q |
294 |
atcaatatagacaacatataaagttcctctgagcagctcagcatttcacctgaccct |
350 |
Q |
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| T |
2984330 |
atcattatagccagcatataaagtttctttgagcagttcagcatttcacctgaccct |
2984386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 30048081 - 30048033
Alignment:
| Q |
526 |
tttttgacttgcagattgcatgcagagactatcctcattcccggcatct |
574 |
Q |
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|||||||||||||| ||||||| ||||||||||||||| |||| ||||| |
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| T |
30048081 |
tttttgacttgcaggttgcatgtagagactatcctcatgcccgacatct |
30048033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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