View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263-Insertion-4 (Length: 674)
Name: NF1263-Insertion-4
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 8 - 674
Target Start/End: Complemental strand, 54948882 - 54948217
Alignment:
| Q |
8 |
ctaacgtcatagaaattgaagtcttcggatccccaaatcaacgaagaagtttcgcatttctctgtgaggtctgatctaacacacatgattttgtcaaggg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54948882 |
ctaacgtcatagaaattgaagtcttcggattcccaaatcaacgaagaagtttcgcatttctctgtgaggtctgatctaacacacatgattttgtcaaggg |
54948783 |
T |
|
| Q |
108 |
gaggtttgtctcgtgtttcggtggcaacatggcctaaagcacggtagccattaggggctactggtagccaaatatacaaaggcaagacttgagtagctga |
207 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54948782 |
gaggtttgtctcgtgttttggtgacaacatggcctaaagcacggtagccattaggtgctactggtagccaaatatacaaaggcaagacttgagtagctga |
54948683 |
T |
|
| Q |
208 |
ataggatttagctttcaatacaaatgtgtaatcaattggtggctttaatgtactttttgtagtgcttgaagaaacatcttttgccacaagaacataccca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
54948682 |
ataggatttagctttcaatacaaatgtgtaatcaattggtggctttaatgtgctttttgtggtgcttgaagaaacatcttttgctacaagaacataccca |
54948583 |
T |
|
| Q |
308 |
aaaagaggtttgttgttgggttggctgtagctgcctaacatagagaacccttgaggtattcctgttggttcgaacactgaggctcctttatcatccggtc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54948582 |
aaaagaggtttgttgttgggttggctgtagctgcctaacatagagaatccttgaggtattcctgttggttcgaacactgaggctcctttatcatccggtc |
54948483 |
T |
|
| Q |
408 |
caccatcaatggcgccccaaattttgttaaacgttgatactgcagacacttgcagcccacctagatcgaggactcctctcgcgaaaccattacctgtatg |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54948482 |
caccatcaatggcgccccaaattttgttaaacgttgatgctgcagacacttgcagcccacctagatcgaggactcctctcgcgaaaccattacctgtatg |
54948383 |
T |
|
| Q |
508 |
ttgcaattcaacggatgttataatcagagtattctttataatatatcataaaaggagagaaaaatggaaatcaaatgatggataccttttggccaagaag |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54948382 |
ttgcaattcaacggatgttataatcagagtattctctataatatatcataaaaggagagaaaaatggaaatcaaatgatggataccttttggccaagaag |
54948283 |
T |
|
| Q |
608 |
tagttgcagttggaagcttgaatacggtatcaatgggggcgggagtgagttcgctttttcttgaaga |
674 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
54948282 |
tagttgcagttggaagcttgaatacggtatcaat-ggggcgggagtgagttcgcattttcttgaaga |
54948217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 9e-72; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 8 - 474
Target Start/End: Complemental strand, 26355825 - 26355359
Alignment:
| Q |
8 |
ctaacgtcatagaaattgaagtcttcggatccccaaatcaacgaagaagtttcgcatttctctgtgaggtctgatctaacacacatgattttgtcaaggg |
107 |
Q |
| |
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||||| ||||| ||||||||||| | |||||||| ||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
26355825 |
ctaacatcataaaaattgaagtcgtttgatccccagatccacgaagaagactcgcattggtctgtgaggtctgatctgacacacatgattttgtcaaggg |
26355726 |
T |
|
| Q |
108 |
gaggtttgtctcgtgtttcggtggcaacatggcctaaagcacggtagccattaggggctactggtagccaaatatacaaaggcaagacttgagtagc-tg |
206 |
Q |
| |
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|||||| ||| ||||| ||||| |||||||||||||||| ||| |||| ||| |||| ||||| ||||||||| | | ||||| || | | |
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| T |
26355725 |
aaggtttatcttgtgttgcggtgacaacatggcctaaagctttgtaaccatcaggtgctattggtaaccaaatataacatgtggtatcttgattaacctt |
26355626 |
T |
|
| Q |
207 |
aataggatttagct-ttcaatacaaatgtgtaatcaattggtggctttaatgtactttttgtagtgcttgaagaaacatcttttgccacaagaacatacc |
305 |
Q |
| |
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||||| || | | |||||||||| ||| |||||||||||| |||||| || || || ||||| |||||||||||||| ||||||||||||||||| | |
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| T |
26355625 |
aatag--ttgatgtgttcaatacaagtgtataatcaattggtttctttaaagtgctattagtagtacttgaagaaacatcctttgccacaagaacatatc |
26355528 |
T |
|
| Q |
306 |
caaaaagaggtttgttgttgggttggctgtagctgcctaacatagagaacccttgaggtattcctgttggttcgaacactgaggctcctttatcatccgg |
405 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||| ||||||||||| || | || ||| |||| || ||| || |
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|
| T |
26355527 |
caaaaagaggtttgttgttaggttggctgtagcaacccaacatagagaatccttgaggtatacctgttggttcaaatattgtggcaccttgattatctgg |
26355428 |
T |
|
| Q |
406 |
tccaccatcaatggcgccccaaattttgttaaacgttgatactgcagacacttgcagcccacctagatc |
474 |
Q |
| |
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|||||||||| || | |||||| ||||||||| ||||||||| |||||||| || ||||||||||| |
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|
| T |
26355427 |
tccaccatcataggtggcccaaactttgttaaatgttgatacttgtgacacttgaagtccacctagatc |
26355359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 26348612 - 26349111
Alignment:
| Q |
17 |
tagaaattgaagtcttcggatccccaaatcaacgaagaagtttcgcatttctctgtgaggtctgatctaacacacatgattttgtcaaggggaggtttgt |
116 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||| || |||| ||||||||||||||||| |||||||||||||||||||| | |||||| | |
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|
| T |
26348612 |
tagaaattgaagttgtttgatccccaaatccacgaagaagactcacattggtctgtgaggtctgatctgacacacatgattttgtcaagtgaaggtttat |
26348711 |
T |
|
| Q |
117 |
ctcgtgtttcggtggcaacatggcctaaagcacggtagccattaggggctactggtagccaaatatacaaaggcaagacttgagtagctgaataggattt |
216 |
Q |
| |
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|| ||||| |||| ||||||| |||||||| ||| |||||||| |||| ||||| ||||||||| | || | |||||||||| ||||| |
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| T |
26348712 |
cttgtgttgtggtgacaacatgtcctaaagctttgtatccattaggtgctattggtaaccaaatataaagagtggaatcttgagtagccttgaaggatgc |
26348811 |
T |
|
| Q |
217 |
agctttcaatacaaatgtgtaatcaattggtggctttaatgtactttttgtagtgcttgaagaaacatcttttgccacaagaacatacccaaaaagaggt |
316 |
Q |
| |
|
| ||| |||||| ||||||||||| |||||| ||||| || || ||| || |||||||||||||| ||||| |||| |||||| ||||||||||| |
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| T |
26348812 |
ggtgttcgatacaagtgtgtaatcaactggtggttttaaagttctacctgtggtacttgaagaaacatcctttgctacaaaaacatatccaaaaagaggc |
26348911 |
T |
|
| Q |
317 |
ttgttgttgggttggctgtagctgcctaacatagagaacccttgaggtattcctgttggttcgaacactgaggctcctttatcatccggtccaccatcaa |
416 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||| |||| ||||| |||| || ||| | ||||| || |
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|
| T |
26348912 |
ttattgtttggttggctgtagctacctaacatagagaatcctttaggtattcctgttggttcatacacggaggcgccttgattgtccaggccaccctcgt |
26349011 |
T |
|
| Q |
417 |
tggcgccccaaattttgttaaacgttgatactgcagacacttgcagcccacctagatcgaggactcctctcgcgaaaccattacctgtatgttgcaattc |
516 |
Q |
| |
|
|| ||||||| |||| | || |||||| || | ||||||| ||||||||||||||||||| ||| | |||||||||||||||| |||| ||||||| |
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|
| T |
26349012 |
acgcaccccaaactttgctgaaagttgatgcttgatacacttgtagcccacctagatcgaggaatccgcctgcgaaaccattacctgaatgtcgcaattc |
26349111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 26333370 - 26333772
Alignment:
| Q |
8 |
ctaacgtcatagaaattgaagtcttcggatccccaaatcaacgaagaagtttcgcatttctctgtgaggtctgatctaacacacatgattttgtcaaggg |
107 |
Q |
| |
|
|||||||| |||||||| ||||| | |||||||||||| | | ||||| || |||| ||| |||||||||| ||| |||||||||| |||||| ||| |
|
|
| T |
26333370 |
ctaacgtcgtagaaatttaagtcgtttgatccccaaatccatgtagaagactcacattgctcagtgaggtctgctctgacacacatgactttgtcggggg |
26333469 |
T |
|
| Q |
108 |
gaggtttgtctcgtgtttcggtggcaacatggcctaaagcacggtagccattaggggctactggtagccaaatatacaaaggcaagacttgagtagctga |
207 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||| |||| ||||||||| ||| |||| |||| ||||||||||||||| || ||||| | | |
|
|
| T |
26333470 |
aaggtttgtcttgtgttgtggtgacaacatggcctacagcatggtagccatcaggtgctatcggtaaccaaatatacaaaggggagtcttgatcaaccat |
26333569 |
T |
|
| Q |
208 |
ataggatttagctttcaatacaaatgtgtaatcaattggtggctttaatgtactttttgtagtgcttgaagaaacatcttttgccacaagaacataccca |
307 |
Q |
| |
|
|||| | || |||| ||||||||||||| |||||||||||| || | || || || ||| |||| ||| ||||| |||||||||| ||| |
|
|
| T |
26333570 |
gacggatgcggtgtttgatactaatgtgtaatcaactggtggctttaaagtgccattagtggtacttcctgaaatatcctttgctgcaagaacatatcca |
26333669 |
T |
|
| Q |
308 |
aaaagaggtttgttgttgggttggctgtagctgcctaacatagagaacccttgaggtattcctgttggttcgaacactgaggctcctttatcatccggtc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | || | | ||||||||||||| |||| ||||| |||| ||||||||||| |
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|
| T |
26333670 |
aaaagaggtttgttgttgggttggctgtagctgcctaacatagaatatccgtacctcagtcctgttggttcgtacaccgaggcgccttgatcatccggtc |
26333769 |
T |
|
| Q |
408 |
cac |
410 |
Q |
| |
|
||| |
|
|
| T |
26333770 |
cac |
26333772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 35 - 352
Target Start/End: Original strand, 26338718 - 26339032
Alignment:
| Q |
35 |
gatccccaaatcaacgaagaagtttcgcatttctctgtgaggtctgatctaacacacatgattttgtcaaggggaggtttgtctcgtgtttcggtggcaa |
134 |
Q |
| |
|
|||||||||||||| | ||| | ||| |||| |||||||||||||||||| |||||||||| ||||| || |||||| ||| |||||| |||| ||| |
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|
| T |
26338718 |
gatccccaaatcaatgtagacgattcacattgctctgtgaggtctgatctgacacacatgactttgttggtggaaggtttatcttgtgttttggtgacaa |
26338817 |
T |
|
| Q |
135 |
catggcctaaagcacggtagccattaggggctactggtagccaaatatacaaaggcaagacttgagtagctgaataggatttagctttcaatacaaatgt |
234 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| ||||||||| |||||||||| || |||||||| | | |||| || |||||||| | || |
|
|
| T |
26338818 |
catggcctacagcatggtagccattaggtgctattggtagccagatatacaaagaagagtcttgagtaaccgtgatggatgcagtgttcaatactagtga |
26338917 |
T |
|
| Q |
235 |
gtaatcaattggtggctttaatgtactttttgtagtgcttgaagaaacatcttttgccacaagaacatacccaaaaagaggtttgttgttgggttggctg |
334 |
Q |
| |
|
|||||||| ||||||||||| || | | |||| || |||| ||| ||||| ||||||||||| ||||||||||| ||| |||||||||||||| |
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| T |
26338918 |
gtaatcaacaggtggctttaaagtgccat---tagtctttcctgaaatatcctttgctacaagaacataaccaaaaagaggcttgctgttgggttggctg |
26339014 |
T |
|
| Q |
335 |
tagctgcctaacatagag |
352 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
26339015 |
taactgcctaacatagag |
26339032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 102
Target Start/End: Original strand, 26325531 - 26325562
Alignment:
| Q |
71 |
gtgaggtctgatctaacacacatgattttgtc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26325531 |
gtgaggtctgatctaacacacatgattttgtc |
26325562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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