View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263-Insertion-5 (Length: 726)
Name: NF1263-Insertion-5
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263-Insertion-5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 7 - 726
Target Start/End: Original strand, 38608817 - 38609546
Alignment:
| Q |
7 |
acattccttagtttaaacaagccagccagcctcatcacatgcaacctaactagaacatacagtgttcggtttaaacaagtcaccctcaatatatgcaacc |
106 |
Q |
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| T |
38608817 |
acattccttagtttaaacaagccagccagcctcatcacatgcaacctaactagaacatacattgttcggtttaaacaagtcaccctcaatatatgcaacc |
38608916 |
T |
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| Q |
107 |
taagaaacgatatgagaataaataactactaggnnnnnnngaacaacgtagcatatccatagagagctaatcaa--------caagacccttatttgcca |
198 |
Q |
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| T |
38608917 |
taagaaacgatatgagaataaataactactaggaaaaaaagaacaacgtagcatatccatacagagctaatcaaataatcaacaaaacccttatttgcca |
38609016 |
T |
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| Q |
199 |
atgcataccaaaatgtcaccaaaacacgagtatcatttgcaaa-agtataacaaaccatattgtgacagtactttgaacgatacctgaacctacgaataa |
297 |
Q |
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| T |
38609017 |
atacataccaaaatgtcaccaaagcacgagtatcattggcaatcagtatcacaaaccatattgtgacagtactttgaacgatacctgaacctacaaataa |
38609116 |
T |
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| Q |
298 |
tatatgacacacaaacaaagagcaatgtgcctcatataacttgataaactgacgacacaataacctaacatcattttattccttcgaaacatgttgttta |
397 |
Q |
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| T |
38609117 |
tatatgacacacaaacaaagagcaatgtgactcatataacttgataaactgacgacacaataacctaacatcattttattccttcggaacatgttgttta |
38609216 |
T |
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| Q |
398 |
aatacaaattttgaagaaattaacttatatttgcaataaacacaatgcaaacaagctttacaaagagacggtagagagatatcatagaacttatatttgc |
497 |
Q |
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| T |
38609217 |
aatacaaattttgaagaaattaacttatatttgcaataaacacaatgcaaacaagctttacaaagagacgatagagagatatcatagaacttatatttgc |
38609316 |
T |
|
| Q |
498 |
aataaacacaatgcaaacaagctttacaaagagacgatagagagatatcataggcacggtt-acaataatnnnnnnnnnnttgaagtagcagaggatcct |
596 |
Q |
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| T |
38609317 |
aataaacacaatgcaaacaagctttacaaagagacgatagagagatatcataggcacggttgacaataataaaaaaaaaattgaagtagcagatgatcct |
38609416 |
T |
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| Q |
597 |
ccacgactcacctgaccaagcccatgcccatttttgtggatctccgcatgtatttttgggccctgtgagacatgattagtgcattcataaatgtaaaaaa |
696 |
Q |
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| T |
38609417 |
ccatgactcacctgaccaagcccatgcccatttttgtggatctccgcatgtatttttgggccctgtgagacatgattagtgcattcataaatgtaaaaaa |
38609516 |
T |
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| Q |
697 |
ggtaatatgacaaacaagttacatacgata |
726 |
Q |
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| T |
38609517 |
ggtatagtgacaaacaagttacatacgata |
38609546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 252 - 484
Target Start/End: Original strand, 38604036 - 38604267
Alignment:
| Q |
252 |
accatattgtgacagtactttgaacgatacctgaacctacgaataatatatgacacacaaacaaagagcaatgtgcctcatataacttgataaactgacg |
351 |
Q |
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| T |
38604036 |
accaaattgtgatagtactctgaacgacacttggacctgcgtataatttacggcacacaaatagaca-caatgcgacacaaataacatgataaattgaca |
38604134 |
T |
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| Q |
352 |
acacaataacctaacatcattttattccttcgaaacatgttgtttaaatacaaattttgaagaaattaacttatatttgcaataaacacaatgcaaacaa |
451 |
Q |
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| T |
38604135 |
atacaatgacctaagatcattttatccctctaaaacatgttgtctaattactagttttgaagaaattaaattatatctgcaattaacaaaatgcaaacaa |
38604234 |
T |
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| Q |
452 |
gctttacaaagagacggtagagagatatcatag |
484 |
Q |
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| T |
38604235 |
gtttcacagagagaggatagagagacatcatag |
38604267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 553
Target Start/End: Original strand, 38604205 - 38604270
Alignment:
| Q |
488 |
ttatatttgcaataaacacaatgcaaacaagctttacaaagagacgatagagagatatcataggca |
553 |
Q |
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|||||| |||||| |||| |||||||||||| || ||| ||||| |||||||||| |||||||||| |
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| T |
38604205 |
ttatatctgcaattaacaaaatgcaaacaagtttcacagagagaggatagagagacatcataggca |
38604270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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