View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263-Insertion-7 (Length: 224)
Name: NF1263-Insertion-7
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 12024552 - 12024348
Alignment:
| Q |
7 |
aacacacagtttcactctgttttaaattgtgaccattggatctttattggcatgatactattgtaatattatcaaaccatccaatggctgaaatgaaaac |
106 |
Q |
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| T |
12024552 |
aacacacagtttcacactgttttaaattgtgaccattggatctttattggcatgatactattgtaatattatcaaatcatccaatggctgaaatgaaaac |
12024453 |
T |
|
| Q |
107 |
tgtgttgtactttacaacaccaaatccatattcgtatcgaacctgtgaacccagcatgctttaatcatgctt-cttccaccgctggatcaatgtaacttc |
205 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12024452 |
tgtgttgtactttacaacaccaaatccatatccgtatcgaacctgtgaacccagcatgctttaatcatgcttgcttccaccgctggatcaatgtaacttc |
12024353 |
T |
|
| Q |
206 |
tatat |
210 |
Q |
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||||| |
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| T |
12024352 |
tatat |
12024348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 34988476 - 34988605
Alignment:
| Q |
7 |
aacacacagtttcactctgttttaaattgtgaccattggatctttattggcatgatactattgtaatattatcaaaccatccaatggctgaaatgaaaac |
106 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| || |||| |
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| T |
34988476 |
aacacacagtttcacaaagttttgaattgtgaccattggatctttattggcatgggactattatagtattatcaaaccatccaatggctgaattg-aaac |
34988574 |
T |
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| Q |
107 |
tgtgttgtactttacaacaccaaatccatat |
137 |
Q |
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| T |
34988575 |
tgtgttgtactttacagcaccaaatccatat |
34988605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 45167632 - 45167740
Alignment:
| Q |
25 |
gttttaaattgtgaccattggatctttattggcatgatactattgtaatattatcaaaccatccaatggctgaaatgaaaactgtgttgtactttacaac |
124 |
Q |
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| T |
45167632 |
gttttcaattataaccattggatctttattgg-atggtactgttataactttgtccaaccatccaatgg-tgagataaaaactgtgttgctttttacagc |
45167729 |
T |
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| Q |
125 |
accaaatccat |
135 |
Q |
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||||||||||| |
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| T |
45167730 |
accaaatccat |
45167740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 43895393 - 43895518
Alignment:
| Q |
12 |
acagtttcactctgttttaaattgtgaccattggatctttattggcatgatactattgtaatattatcaaaccatccaatggctgaaatgaaaactgtgt |
111 |
Q |
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|||||||||| | ||||| |||| |||| ||||||| |||||||| ||| ||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
43895393 |
acagtttcacacagttttgaattatgactattggatttttattggtatggtactattataatatcatcaaaccatccactggctgaaatgaaaactgtgt |
43895492 |
T |
|
| Q |
112 |
tgtactttacaacaccaaatccatat |
137 |
Q |
| |
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||||||||||| |||||||||||||| |
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|
| T |
43895493 |
tgtactttacagcaccaaatccatat |
43895518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 33813631 - 33813702
Alignment:
| Q |
66 |
attgtaatattatcaaaccatccaatggctgaaatgaaaactgtgttgtactttacaacaccaaatccatat |
137 |
Q |
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| T |
33813631 |
attgtaattttatcaaaccatccaatagctgaaataaaaactgtgttgtactttacagcaccaaatccatat |
33813702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 40841205 - 40841300
Alignment:
| Q |
25 |
gttttaaattgtgaccattggatctttattggcatgatactattgtaatattatcaaaccatccaatggctgaaatgaaaactgtgttgtactttaca |
122 |
Q |
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||||| |||| ||||||||| |||||||||| | || || |||| |||| ||||||||||||| |||| ||||||| ||||||||||| ||||||||| |
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| T |
40841205 |
gttttgaattatgaccattgaatctttattgac-tggtattattataattttatcaaaccatctaatg-ctgaaataaaaactgtgttatactttaca |
40841300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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