View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1263-Insertion-8 (Length: 832)
Name: NF1263-Insertion-8
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263-Insertion-8 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Original strand, 50095404 - 50095815
Alignment:
| Q |
8 |
ctaatgacttgtgaaattcactggaatttgttcagagtaactgtggtctgtggaatgtgatagaaggatgaggtttatgttcttaacattacttagacct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50095404 |
ctaatgacttgtgaaattcactggaatttgttcagagtaactgtgatctgtggaatgtgatagaaggatgaggtttatgttcttaacattacttagacct |
50095503 |
T |
|
| Q |
108 |
gtatctgtaacccgacctgctaacatactggttacataacaacgtcttttgagtttgtgaattgttgaaataggccacccacaattttgcaccaattaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50095504 |
gtatctgtaacccgacctgctaacatactggttacataacaacgtcttttgagtttgtgaattgttgaaataggccacccacaattttgcaccaattaaa |
50095603 |
T |
|
| Q |
208 |
tatttactcaagctacattctggtttctttttgttcatttcaggcttacaatttgattcattctccagctacattacactacctcgctccttatacaggt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||| |
|
|
| T |
50095604 |
tatttactcaagctacattctggtttctttttgttcatttatggcttacagtttgattcattctccagctacagtacactatctcgctccttatataggt |
50095703 |
T |
|
| Q |
308 |
gcagctctggctgaatatttcatgtaccgcgaacgtcacactttaatcatttatgacgatccctccaaacaagcacaaacttattgccaaatgtctcttt |
407 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
50095704 |
gcaactctggctgaatatttcatgtaccgcgaacgtcacactttaatcatttacgacaatcctttcaaacaagcacatgcttattgccaaatgtctcttt |
50095803 |
T |
|
| Q |
408 |
tattacgaagac |
419 |
Q |
| |
|
|||||||||||| |
|
|
| T |
50095804 |
tattacgaagac |
50095815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 415 - 832
Target Start/End: Original strand, 50097031 - 50097445
Alignment:
| Q |
415 |
aagaccaacaggtcacgaagcgtatcccgaagatgttttttatttatattctcgtcttttggaaagagccgctaaattaagttatcagttaggtgaagga |
514 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
50097031 |
aagaccaccaggtcacgaagcgtatcccgaaaatgttttttatttatattctcgtcttttggaaagagctgctaaattaagttctcaattaggtgaagga |
50097130 |
T |
|
| Q |
515 |
agtatgacaactttaccaatagttgagacccaattaggagatgtttcagcttatattcctattaatgtaattttcattacaaatggccaaatatttatat |
614 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
50097131 |
agtatgactactttaccaatagttgagacccaattaggagatgtttcagcttatattcctactaatgtaattttcattagagatggccaaatatttatat |
50097230 |
T |
|
| Q |
615 |
ctgccgatctattcaaagctggaatcaaaccatgtttatggacttgtatccgattaaatgtggcaattaaaactaaattgtttaatgagtaaaagaggtt |
714 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50097231 |
ctgccgatctattcaatgctggaatcagaccatgtttatgaacttgtat----ttaaatgtggcaattaaaactaaattgtttaatgagtaaaagaggtt |
50097326 |
T |
|
| Q |
715 |
attgaaatcttaaaattttaattagttaagcagtattttggaaaatgtcaaatattttgaaagtagtcttagagtttttaaaattttatcatatctac-t |
813 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
50097327 |
attgaaatcttaaaattttaattagttaaagagtattttggaaaatgtcaaatattttgaaaatagtcttagagtttttaaaattttatcgtatctactt |
50097426 |
T |
|
| Q |
814 |
ttttatatcggtacataat |
832 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
50097427 |
ttttatatcagtacataat |
50097445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 267 - 646
Target Start/End: Original strand, 1422405 - 1422784
Alignment:
| Q |
267 |
attctccagctacattacactacctcgctccttatacaggtgcagctctggctgaatatttcatgtaccgcgaacgtcacactttaatcatttatgacga |
366 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1422405 |
attctccatctacattacaatacctcgctccttatacaggtgcagctctggctgaatattttatgtaccgtgaacgtcacactttaatcatttatgacga |
1422504 |
T |
|
| Q |
367 |
tccctccaaacaagcacaaacttattgccaaatgtctcttttattacgaagaccaacaggtcacgaagcgtatcccgaagatgttttttatttatattct |
466 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||| ||| ||||||||||| ||| | |
|
|
| T |
1422505 |
tccctcaaaacaagcacaagcttatcgccaaatgtctcttctattacgaagaccaccaggtcgcgaagcgtatcccatggatattttttatttacattat |
1422604 |
T |
|
| Q |
467 |
cgtcttttggaaagagccgctaaattaagttatcagttaggtgaaggaagtatgacaactttaccaatagttgagacccaattaggagatgtttcagctt |
566 |
Q |
| |
|
||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1422605 |
cgtcttttgaaaacaaccgctaaattaagttctcagttaggtgaaggaagtatgactgctttatcaatagttgagacccaatcaggagatgtttcagctt |
1422704 |
T |
|
| Q |
567 |
atattcctattaatgtaattttcattacaaatggccaaatatttatatctgccgatctattcaaagctggaatcaaacca |
646 |
Q |
| |
|
||||||||| |||| |||||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |||| |
|
|
| T |
1422705 |
atattcctactaatctaatttccattacagatggccaaatatttttatctgccgatctattcaatgctggaatcagacca |
1422784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 6747818 - 6747906
Alignment:
| Q |
274 |
agctacattacactacctcgctccttatacaggtgcagctctggctgaatatttcatgtaccgcgaacgtcacactttaatcatttatg |
362 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
6747818 |
agctacattacaatacctcgctccttatacaggtgcagctctggctgaatattttatgtaccgtgaacgtcacactttaatcatttatg |
6747906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 21838512 - 21838619
Alignment:
| Q |
274 |
agctacattacactacctcgctccttatacaggtgcagctctggctgaatatttcatgtaccgcgaacgtcacactttaatcatttatgacgatccctcc |
373 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21838512 |
agctacattacaatacctcactccttatacaggtgcagctctagctgaatattttatgtactgtgaacgtcacactttaatcatttatgacgatctctca |
21838611 |
T |
|
| Q |
374 |
aaacaagc |
381 |
Q |
| |
|
|||||||| |
|
|
| T |
21838612 |
aaacaagc |
21838619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 34361735 - 34361790
Alignment:
| Q |
323 |
tatttcatgtaccgcgaacgtcacactttaatcatttatgacgatccctccaaaca |
378 |
Q |
| |
|
||||| || ||||| |||| ||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
34361735 |
tattttatttaccgggaacatcacactttaatcatttatgacgattcctcaaaaca |
34361790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 275 - 639
Target Start/End: Original strand, 235200 - 235564
Alignment:
| Q |
275 |
gctacattacactacctcgctccttatacaggtgcagctctggctgaatatttcatgtaccgcgaacgtcacactttaatcatttatgacgatccctcca |
374 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||| |||||||| ||||| |||||||||||||| || |||||||| |||||||| |||| ||||| |
|
|
| T |
235200 |
gctacattacaatacctcgctccttatacgggagcagccctggctgagtattttatgtaccgcgaacggcatactttaataatttatgatgatctctcca |
235299 |
T |
|
| Q |
375 |
aacaagcacaaacttattgccaaatgtctcttttattacgaagaccaacaggtcacgaagcgtatcccgaagatgttttttatttatattctcgtctttt |
474 |
Q |
| |
|
|||| |||||| ||||| |||||||||| ||| ||||| ||||||| | || | || || ||||| | |||||||||||||| |||| || ||||| |
|
|
| T |
235300 |
aacaggcacaagcttatcgccaaatgtcccttctattaagaagacctcccggccgtgaggcttatccaggggatgttttttatttgcattcacgcctttt |
235399 |
T |
|
| Q |
475 |
ggaaagagccgctaaattaagttatcagttaggtgaaggaagtatgacaactttaccaatagttgagacccaattaggagatgtttcagcttatattcct |
574 |
Q |
| |
|
||||||||||||||||||| || || ||||| |||||||||||||| ||||||||||||||||||| |||| ||||| ||||| || ||||||||| |
|
|
| T |
235400 |
agaaagagccgctaaattaaattctcttttaggcgaaggaagtatgaccgctttaccaatagttgagactcaatctggagacgtttccgcctatattcct |
235499 |
T |
|
| Q |
575 |
attaatgtaattttcattacaaatggccaaatatttatatctgccgatctattcaaagctggaat |
639 |
Q |
| |
|
| ||||||||| | ||||||| |||| |||||||| |||| || ||||||||||| || ||||| |
|
|
| T |
235500 |
actaatgtaatctccattacagatggacaaatattcttatcggcggatctattcaatgccggaat |
235564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 650 - 743
Target Start/End: Complemental strand, 35497046 - 35496955
Alignment:
| Q |
650 |
ttatggacttgtatccgattaaatgtggcaattaaaactaaattgtttaatgagtaaaagaggttattgaaatcttaaaattttaattagttaa |
743 |
Q |
| |
|
||||| ||||||| ||||||||||||| |||||||||||||||||||||||| || |||||| |||||||||| ||||||| |||||||| |
|
|
| T |
35497046 |
ttatgcacttgtacccgattaaatgtgatggttaaaactaaattgtttaatgagt--aataggttactgaaatcttacaattttagttagttaa |
35496955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 45533289 - 45533335
Alignment:
| Q |
267 |
attctccagctacattacactacctcgctccttatacaggtgcagct |
313 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45533289 |
attctccagctacattacaatacctcgctccttatacaggtgcagct |
45533335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University