View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12630_high_4 (Length: 206)
Name: NF12630_high_4
Description: NF12630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12630_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 42798920 - 42798746
Alignment:
| Q |
18 |
caaagcatcattatattctttgcttcatgatatgagtggcatatcttcacctcccagtccatttctacaagtctttgaatacactcgataagactccttt |
117 |
Q |
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| T |
42798920 |
caaagcatcattatattctttgcttcatgatacgagtggcatatcttcacctcccagtccatttctacaagtctttgaatacactcgataagactccttt |
42798821 |
T |
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| Q |
118 |
ccaacaatgttcatacattactctgcgtaacataattaacaacagtctctctcacaatccacacataactccact |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798820 |
ccaacaatgttcatacattactctgcgtaacataattaacaacagtctctctcacaatccacacataactccact |
42798746 |
T |
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