View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12630_low_1 (Length: 545)
Name: NF12630_low_1
Description: NF12630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12630_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 12141382 - 12140972
Alignment:
| Q |
18 |
acagaacgaaacctgtcaacattgtgttggctttcttcggcctgctactcatcctcctctcctgagtgttttgatccactgccatatgaaaatgaaaaat |
117 |
Q |
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| T |
12141382 |
acagaacgaaacctgtcaacattgtgttggctttcttcggcctgctactcatcctcctttcctgagtgttttgatgcactgccatatgaaaatgaaaaat |
12141283 |
T |
|
| Q |
118 |
atatgtcaattattacattgcataacccaaatttgaagtagcataagaatgtttctgttatacgtttttgcaatgtgaaaagtctcatcttgaaaaaatc |
217 |
Q |
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| T |
12141282 |
atatgtcaattattacattccataacccaaatttgaagtagcaaaggaatgtttctgttatacgattttgcaatgtgaaaagtctcatcttgaaaaaatc |
12141183 |
T |
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| Q |
218 |
aagatgtatactatcattcagattaaaacttcaaccaaatcgaactcaaccatgataattgccaaattcaatttaaaatatgttacccaaaacattgtga |
317 |
Q |
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| T |
12141182 |
aagatgtatactatcattcagactaaaacttcaaccaaatcaaactcaaccatgataattgccaaattcaatttaaaataagttacccaaaacatggtga |
12141083 |
T |
|
| Q |
318 |
aaattaatgcctccattaagagcaaacacacatgacattctgcgaaataagtgccaagaaaacgattctaaaggtatagatataatcatataagcactgt |
417 |
Q |
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| T |
12141082 |
aaattaatgcctccattaagaacaaacacacatgacattctgcgaaataagtgccaagaaaattattctaaatgtatagatataatcatataagcactgt |
12140983 |
T |
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| Q |
418 |
tgagacctttt |
428 |
Q |
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| T |
12140982 |
tgagacctttt |
12140972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 12142432 - 12142231
Alignment:
| Q |
18 |
acagaacgaaacctgtcaacattgtgttggctttcttcggcctgctactcatcctcctctcctgagtgttttgatccactgccatatgaaaatgaaaaat |
117 |
Q |
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|||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |
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| T |
12142432 |
acagaacgaaacctttcaacgttgtgttggctatcttcgttctgctactcatcctcctcttctgagtgttttgatccactgccatgcgaaaat--aaaaa |
12142335 |
T |
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| Q |
118 |
atatgtcaattattacattgcataacccaaatttgaagtagcataagaatgtttctgttatacgtttttgcaatgtgaaaagtctcatcttgaaaaaatc |
217 |
Q |
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|| |||||||||||||||| | ||||| ||||||||||| ||| | ||||| |||||| ||| |||||| |||||||||||||||||||||||||||||| |
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| T |
12142334 |
atttgtcaattattacattccttaacctaaatttgaagttgcaaaggaatgattctgtaataagttttttcaatgtgaaaagtctcatcttgaaaaaatc |
12142235 |
T |
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| Q |
218 |
aaga |
221 |
Q |
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|||| |
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| T |
12142234 |
aaga |
12142231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 477 - 530
Target Start/End: Complemental strand, 12140923 - 12140870
Alignment:
| Q |
477 |
caatggcaacaggatggtttatctcttacccgctgcatcagttcccaactcagt |
530 |
Q |
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| T |
12140923 |
caatggcaacaggatggtttatctcttacccgctgcatcagttcccaactcagt |
12140870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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