View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12630_low_2 (Length: 389)
Name: NF12630_low_2
Description: NF12630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12630_low_2 |
 | |
|
| [»] chr6 (32 HSPs) |
| |
|
| [»] scaffold0477 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 32)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 4616839 - 4617227
Alignment:
| Q |
1 |
ttgcaatctaagataaactctgaatatgaacttagaaatttattactttgattgacgatttggtacacttaccaataatccaccaataaacccaaattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4616839 |
ttgcaatctaagataaactctgaatatgaacttagaaatttattactttgattgacgatttggtacacttaccaataatccaccaataaacccaaattaa |
4616938 |
T |
|
| Q |
101 |
atattgaaacaatacatagttaaaaatacagtacatcaaagcatagtaatagcctaaaaattttgatacgacctcgtgccttaattttgtttaagcaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
4616939 |
atattgaaacaatacatagttaaaaatacagtacatcaaagcatagtaatggcctaaaaatttcgatacgacctcctggcttaattttgtttaagcaaca |
4617038 |
T |
|
| Q |
201 |
cttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatctt |
300 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||| |||| || || |||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
4617039 |
catccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggccttttgcttcatttt |
4617138 |
T |
|
| Q |
301 |
cattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctccc |
389 |
Q |
| |
|
| ||||||||||||| | |||| |||||||||||| || | | || ||||||| ||||||| ||||| |||||||||||| |||||| |
|
|
| T |
4617139 |
ctttcctttatctccggctatcacttcattgatcagctttgccaactcctctctcttcacattcgtatcgatttccataccaatctccc |
4617227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 187 - 389
Target Start/End: Original strand, 4622145 - 4622347
Alignment:
| Q |
187 |
ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
286 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||||||||| |||| ||| ||||| |||| |||||||||| |||||||||||||||| |
|
|
| T |
4622145 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
4622244 |
T |
|
| Q |
287 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
386 |
Q |
| |
|
||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||| || ||| ||| |
|
|
| T |
4622245 |
ttttgtctcatcttctttcctttatctcccgacatcaattcattgatcagattcgacacctcctctcttttcacattagtattgatttcgattccaatct |
4622344 |
T |
|
| Q |
387 |
ccc |
389 |
Q |
| |
|
||| |
|
|
| T |
4622345 |
ccc |
4622347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 182 - 389
Target Start/End: Original strand, 4601787 - 4601994
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||| |||||||||| |||| | || ||| |||||| |||| ||||||||||||||| |
|
|
| T |
4601787 |
taattttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactcca |
4601886 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccatacc |
381 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| | |||| |||||||||||| |||| | || ||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
4601887 |
tggccttttgcctcatcttcttgcctttatctccggctatcacttcattgatcagcttcgccaactcctctctcttcacatttgtatcgatttccatacc |
4601986 |
T |
|
| Q |
382 |
agtctccc |
389 |
Q |
| |
|
| |||||| |
|
|
| T |
4601987 |
aatctccc |
4601994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 182 - 389
Target Start/End: Original strand, 4625949 - 4626156
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
|||| |||||||||||| || || ||||| | ||| |||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4625949 |
taatattgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactcca |
4626048 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccatacc |
381 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| ||||||| |||||||||| ||| |||| ||| ||| ||||||||| ||| |||||||| || |
|
|
| T |
4626049 |
tggccttttgcctcatcttctttccgttatctcctgccatcaatgcattgatcagtttctctaccccctccctcttcacattagcatcgatttccattcc |
4626148 |
T |
|
| Q |
382 |
agtctccc |
389 |
Q |
| |
|
| |||||| |
|
|
| T |
4626149 |
aatctccc |
4626156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 182 - 375
Target Start/End: Original strand, 4516319 - 4516512
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
||||||||||| |||| ||| |||||||| ||||| |||||||||| |||||||| |||| || || |||| ||||||||||||||||||||| |||| |
|
|
| T |
4516319 |
taattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattcca |
4516418 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttc |
375 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||| |||| ||||||| ||||||| ||||||||||| |
|
|
| T |
4516419 |
tggccttttgcctcatcttctttcctttatctcccaccattaattcattgatcagcttctccacctcctctctcttcacattggtatcaatttc |
4516512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 182 - 333
Target Start/End: Original strand, 4480691 - 4480842
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||| ||| || |||| |||||||||| ||||||||||||||| |
|
|
| T |
4480691 |
taattttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactcca |
4480790 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcctttatctcctgacatcaattcattgat |
333 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||||| || |||||||||||| |
|
|
| T |
4480791 |
tggccttttgcttcatcttctttcctttctctcccaccaacaattcattgat |
4480842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 184 - 389
Target Start/End: Original strand, 4592231 - 4592436
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatg |
283 |
Q |
| |
|
||||| |||||||||||| ||||| || | ||||||||||||||| |||||||| || | ||| || ||||||||||||||||||||||||||||| || |
|
|
| T |
4592231 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactcgatt |
4592330 |
T |
|
| Q |
284 |
gccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccag |
383 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||| ||||||||||||||| || ||| |||| ||||||| | ||||| |||||||||||||| ||| |
|
|
| T |
4592331 |
gcctttttcctcatcttctttcctttctctcccaccatcaattcattgataagtttctccacctcctctctctttacattcgtatcaatttccatcccaa |
4592430 |
T |
|
| Q |
384 |
tctccc |
389 |
Q |
| |
|
|||||| |
|
|
| T |
4592431 |
tctccc |
4592436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 182 - 378
Target Start/End: Original strand, 3171739 - 3171935
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
|||| |||||||||||| || |||||||| ||||| |||||||||||||||||||| |||| | || || | |||||||||||||||||||||||||| |
|
|
| T |
3171739 |
taatattgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactcca |
3171838 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccat |
378 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||| ||||||||| |||||||| ||| ||||| | ||||| | ||||| |||||||||||||| |
|
|
| T |
3171839 |
tggccctttgcctcatcttctttcctttctctcccaccatcaattcgttgatcagtttctctacctcccctctctttacattggtatcaatttccat |
3171935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 205 - 389
Target Start/End: Complemental strand, 4260265 - 4260081
Alignment:
| Q |
205 |
cttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatcttcatt |
304 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | ||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
|
|
| T |
4260265 |
cttaataactttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttcttt |
4260166 |
T |
|
| Q |
305 |
cctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctccc |
389 |
Q |
| |
|
|||| ||||||||||| | |||||||||||| |||| |||| ||||| |||||||||||| |||||| || ||| |||||| |
|
|
| T |
4260165 |
ccttcttctcctgacataatttcattgatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctccc |
4260081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 190 - 330
Target Start/End: Complemental strand, 4504523 - 4504383
Alignment:
| Q |
190 |
tttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttt |
289 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||||||||||||||| |||| | | || |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4504523 |
tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttt |
4504424 |
T |
|
| Q |
290 |
tgcctcatcttcattcctttatctcctgacatcaattcatt |
330 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
4504423 |
tgcctcatcttctttcctttctctcccaccatcaattcatt |
4504383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 184 - 332
Target Start/End: Original strand, 4560506 - 4560654
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatg |
283 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||||||||||||||||| || | ||| || |||| | |||| ||||| ||||||| ||||||| |
|
|
| T |
4560506 |
attttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatg |
4560605 |
T |
|
| Q |
284 |
gccttttgcctcatcttcattcctttatctcctgacatcaattcattga |
332 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
4560606 |
gccttttgcctcatcttctttcctttatctcaggacatcaattcattga |
4560654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 187 - 389
Target Start/End: Complemental strand, 4256741 - 4256539
Alignment:
| Q |
187 |
ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
286 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| ||||| ||| || |||||||||| ||||| |||||||||||| |||||| || |
|
|
| T |
4256741 |
ttgtttaagcatgacctccttaataactttgtccaagttcatcaatgaatgaccagctgggctggtgttcttctctgtcttcttcttcaattccatgacc |
4256642 |
T |
|
| Q |
287 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
386 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||| |||||| |||||||||||| ||||| || ||| ||| |
|
|
| T |
4256641 |
ttttgcctcatcttctttcctttttctcccgacatcaattcattgatcagattctccacctcatctctcttcacattagtattgatttcaattccaatct |
4256542 |
T |
|
| Q |
387 |
ccc |
389 |
Q |
| |
|
||| |
|
|
| T |
4256541 |
ccc |
4256539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 184 - 389
Target Start/End: Original strand, 4574308 - 4574513
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatg |
283 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||||| |||||||||| || | ||| || |||| | |||| |||||||||||| ||| ||| |
|
|
| T |
4574308 |
attttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctcaatg |
4574407 |
T |
|
| Q |
284 |
gccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccag |
383 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||| |||| ||| ||| | ||||||||||| |||||| | ||| |
|
|
| T |
4574408 |
gctttttgcctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaa |
4574507 |
T |
|
| Q |
384 |
tctccc |
389 |
Q |
| |
|
|||||| |
|
|
| T |
4574508 |
tctccc |
4574513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 190 - 389
Target Start/End: Complemental strand, 4490481 - 4490282
Alignment:
| Q |
190 |
tttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttt |
289 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||||||||| |||| | || |||| |||| |||||||||||||||||||| | |||||| |
|
|
| T |
4490481 |
tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttt |
4490382 |
T |
|
| Q |
290 |
tgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctccc |
389 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||||||||||||| ||| ||||| |||||| | ||||| |||||||||| ||| ||| |||||| |
|
|
| T |
4490381 |
tgcctcatcttctttcctttctctcccaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatctccc |
4490282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 388
Target Start/End: Original strand, 4505855 - 4506061
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||| || || | ||||| |||| |||| |||||||||| |
|
|
| T |
4505855 |
taattttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactcca |
4505954 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccatacc |
381 |
Q |
| |
|
|| |||||| ||||||||| ||||||| ||||| ||| | ||||| || ||| ||| ||| || ||||| ||||||||||||||||||| || || |
|
|
| T |
4505955 |
tgacctttttcctcatcttgtttcctttctctccaaccataatttcatcgaccagcttctctacattttctctattcacattagtatcaatttcgattcc |
4506054 |
T |
|
| Q |
382 |
agtctcc |
388 |
Q |
| |
|
| ||||| |
|
|
| T |
4506055 |
aatctcc |
4506061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 184 - 389
Target Start/End: Original strand, 4563711 - 4563916
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatg |
283 |
Q |
| |
|
||||||||||||||| || ||||| || |||||||||||||||||||||||||| || | || || ||||| ||||| | |||||||||||||| || |
|
|
| T |
4563711 |
attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactcaatt |
4563810 |
T |
|
| Q |
284 |
gccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccag |
383 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||||||||||||||||||| || ||| |||| |||||| | ||||| ||||| |||||||| ||| |
|
|
| T |
4563811 |
gccttttgccgcatcttctttcctttctctcctgacatcaattcattgacaagtttctccacctcttctctctttacattcgtatcgatttccatcccaa |
4563910 |
T |
|
| Q |
384 |
tctccc |
389 |
Q |
| |
|
|||||| |
|
|
| T |
4563911 |
tctccc |
4563916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 184 - 375
Target Start/End: Original strand, 4579432 - 4579623
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatg |
283 |
Q |
| |
|
||||||||| || ||||| |||||||| ||||| ||||||||||||||||||||||| | ||| || |||| |||||| |||||||||||||||| || |
|
|
| T |
4579432 |
attttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
4579531 |
T |
|
| Q |
284 |
gccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttc |
375 |
Q |
| |
|
|||||||||||||||||| || |||| ||||| |||||||||||| | ||| ||| |||| ||||||| |||||||||| || ||||| |
|
|
| T |
4579532 |
gccttttgcctcatcttctttgctttctctcccaccatcaattcattaaccagcttctccacctcctctctcttcacattagtgtcgatttc |
4579623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 184 - 378
Target Start/End: Complemental strand, 4613850 - 4613656
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatg |
283 |
Q |
| |
|
||||||||| |||| ||| || || || ||||||||||||||||| |||||||| || | || || |||| |||||||||||||||||||||||| || |
|
|
| T |
4613850 |
attttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaactcaatt |
4613751 |
T |
|
| Q |
284 |
gccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccat |
378 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||| |||||||||||||| ||| ||| ||||| |||||| ||||||| || ||||||||||| |
|
|
| T |
4613750 |
gccttttgcctcattttctttcctttctctcccaccatcaattcattgaccagcttctctacctcatctctcttcacattggtgtcaatttccat |
4613656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 184 - 389
Target Start/End: Original strand, 4570972 - 4571177
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatg |
283 |
Q |
| |
|
||||| ||||||||| || |||||||| ||||| |||||||||||||||||||| |||| ||| || |||| |||||| ||||||||||||| |||||| |
|
|
| T |
4570972 |
attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccatt |
4571071 |
T |
|
| Q |
284 |
gccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccag |
383 |
Q |
| |
|
|||| |||||||||| ||||||||||||| |||||||||||||| || |||| |||| | |||| ||||||||||||| ||||| || ||| |
|
|
| T |
4571072 |
atatttttcctcatcttctttcctttatctcccaccatcaattcattgaccaaattctccacctcatttctcttcacattagtatcgatttcgattccaa |
4571171 |
T |
|
| Q |
384 |
tctccc |
389 |
Q |
| |
|
|||||| |
|
|
| T |
4571172 |
tctccc |
4571177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 184 - 389
Target Start/End: Original strand, 4585636 - 4585841
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatg |
283 |
Q |
| |
|
||||| ||||||||| || |||||||| ||||| |||||||| ||||||||||| || | ||| || |||| |||||| ||||||||||||||||| || |
|
|
| T |
4585636 |
attttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaactcgatt |
4585735 |
T |
|
| Q |
284 |
gccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccag |
383 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| |||||||||||||| || ||| |||| ||||||| ||||||| || |||| |||||| ||| |
|
|
| T |
4585736 |
gccttttgcctcatcttctttccattctctcccaccatcaattcattgaccaacttctccacctcctctctcttcacattggtgtcaacttccatcccaa |
4585835 |
T |
|
| Q |
384 |
tctccc |
389 |
Q |
| |
|
|||||| |
|
|
| T |
4585836 |
tctccc |
4585841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 188 - 374
Target Start/End: Original strand, 4598175 - 4598361
Alignment:
| Q |
188 |
tgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcct |
287 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| || ||||||||||||||||| || | | | || || | |||||| |||||| ||||||| || || | || |
|
|
| T |
4598175 |
tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaatcaattgtct |
4598274 |
T |
|
| Q |
288 |
tttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaattt |
374 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||||||| |||| ||| ||| |||| ||||||| |||||||||| ||||||| |
|
|
| T |
4598275 |
tttgcctcattttctttcctttatctcccgacatcaattcgttgaccagcttctccacctcctctctcttcacattagtttcaattt |
4598361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 332
Target Start/End: Complemental strand, 4267295 - 4267150
Alignment:
| Q |
187 |
ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
286 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||| | |||| ||| || |||||||| ||||||||| |||||||||||| | | |
|
|
| T |
4267295 |
ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactccaagaca |
4267196 |
T |
|
| Q |
287 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattga |
332 |
Q |
| |
|
|||||| ||||| | ||||||| ||||| |||||||||||||| |
|
|
| T |
4267195 |
ttttgcttcatcatatttcctttctctcccaccatcaattcattga |
4267150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 184 - 389
Target Start/End: Original strand, 4557125 - 4557330
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatg |
283 |
Q |
| |
|
||||||||||||||| || |||||||| ||||| ||||| |||||||||||||| |||| ||| || |||| |||||| |||||| |||||| ||| || |
|
|
| T |
4557125 |
attttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctcaatt |
4557224 |
T |
|
| Q |
284 |
gccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccag |
383 |
Q |
| |
|
||||| || ||||||| ||||||| || || |||||||||||||| || |||| ||||| |||||| ||||||| || ||||||||||| ||| |
|
|
| T |
4557225 |
atctttttccacatcttctttcctttctccccctccatcaattcattgaccaaattctctacctcatctctcttcacattggtgtcaatttccatgccaa |
4557324 |
T |
|
| Q |
384 |
tctccc |
389 |
Q |
| |
|
|||||| |
|
|
| T |
4557325 |
tctccc |
4557330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 4492953 - 4493086
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgagg-actggtgttctcctctgccttcttcttcaactcc |
280 |
Q |
| |
|
||||||||||||||||| || ||||| || |||||||||||||||||||||||||| |||| ||| ||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
4492953 |
taattttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtact-gtgtcctcctctgccttctttttcaactcc |
4493051 |
T |
|
| Q |
281 |
atggccttttgcctcatcttcattcctttatctcc |
315 |
Q |
| |
|
|||| ||| ||||||||| ||||||| ||||| |
|
|
| T |
4493052 |
gtggcttttctcctcatcttgtttcctttctctcc |
4493086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 203 - 375
Target Start/End: Original strand, 4568072 - 4568247
Alignment:
| Q |
203 |
tccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttc---ttcttcaactccatggccttttgcctcatct |
299 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | ||| ||| || |||| || |||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
4568072 |
tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctcatct |
4568171 |
T |
|
| Q |
300 |
tcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttc |
375 |
Q |
| |
|
| ||||||| | ||| ||| |||||||| ||||| ||| |||| ||||||| ||||||| ||||||||||| |
|
|
| T |
4568172 |
tttttcctttctgtcccaccattaattcattcatcagcttctccacctcctctctcttcacatttgtatcaatttc |
4568247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 389
Target Start/End: Complemental strand, 4299874 - 4299673
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||||||||||||||| ||||| |||| ||| | |||||||||||||| |||||||||| |
|
|
| T |
4299874 |
taatattgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttctcctctgc------cttcaactccc |
4299781 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccatacc |
381 |
Q |
| |
|
| |||||||| |||||||| |||||| ||||| |||||||||||||||||| || |||| ||||||| ||||||| ||||| ||||| || || |
|
|
| T |
4299780 |
ttgccttttgtctcatcttatctcctttctctcccaccatcaattcattgatcagcttttccacctcctctctcctcacatttgtatcgatttcgattcc |
4299681 |
T |
|
| Q |
382 |
agtctccc |
389 |
Q |
| |
|
| |||||| |
|
|
| T |
4299680 |
aatctccc |
4299673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 332
Target Start/End: Complemental strand, 4515255 - 4515105
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||||||||| ||||||| | || | | | || |||| ||| ||||||||||| |||||||||| |
|
|
| T |
4515255 |
taattttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactcca |
4515156 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcctttatctcctgacatcaattcattga |
332 |
Q |
| |
|
| |||||| |||||| || ||||||| ||||| |||||||||||||| |
|
|
| T |
4515155 |
taacctttttcctcattttatttcctttctctcccaccatcaattcattga |
4515105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 306
Target Start/End: Original strand, 4461121 - 4461245
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||| |||||||| || | ||| ||||| | |||||| |||||||||| || |||| |
|
|
| T |
4461121 |
taattttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattcca |
4461220 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcc |
306 |
Q |
| |
|
|| ||||||||||||||||| |||| |
|
|
| T |
4461221 |
tgaccttttgcctcatcttctttcc |
4461245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 332
Target Start/End: Original strand, 4469809 - 4469951
Alignment:
| Q |
190 |
tttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttt |
289 |
Q |
| |
|
||||||||| || |||||||| ||||||||||||||| |||||||| || | ||| ||||| | |||||| |||||||||| ||||||||| |||| |
|
|
| T |
4469809 |
tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttt |
4469908 |
T |
|
| Q |
290 |
tgcctcatcttcattcctttatctcctgacatcaattcattga |
332 |
Q |
| |
|
| |||||||||| |||| || ||||| |||||||||||||| |
|
|
| T |
4469909 |
tccctcatcttctttccattctctccaaccatcaattcattga |
4469951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 290
Target Start/End: Complemental strand, 4392161 - 4392052
Alignment:
| Q |
181 |
ttaattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcc |
280 |
Q |
| |
|
|||||| ||||||||||| || |||||||| | |||||||||||||||| ||||| | |||| ||| | |||| ||||| |||||||||||||||||| |
|
|
| T |
4392161 |
ttaattatgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcg |
4392062 |
T |
|
| Q |
281 |
atggcctttt |
290 |
Q |
| |
|
|| ||||||| |
|
|
| T |
4392061 |
atcgcctttt |
4392052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 4601643 - 4601715
Alignment:
| Q |
91 |
cccaaattaaatattgaaacaatacatagttaaaaatacagtacatcaaagcatagtaatagcctaaaaattt |
163 |
Q |
| |
|
|||||||| ||||||| || | |||||||| ||||||||| | |||||||||||||||||||| ||| ||||| |
|
|
| T |
4601643 |
cccaaattcaatattggaatagtacatagtaaaaaatacattgcatcaaagcatagtaatagcttaataattt |
4601715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 4607023 - 4606972
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaa |
235 |
Q |
| |
|
||||||||||||||| || | |||||| ||||| |||||||||||||||||| |
|
|
| T |
4607023 |
attttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaa |
4606972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 187 - 389
Target Start/End: Complemental strand, 4815 - 4613
Alignment:
| Q |
187 |
ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
286 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4815 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggcc |
4716 |
T |
|
| Q |
287 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4715 |
ttttgcctcatcttcattcctttatctcccgacatcaattcattgatcatattcgttaccttctctctcttcacattagtatcaatttccataccagtct |
4616 |
T |
|
| Q |
387 |
ccc |
389 |
Q |
| |
|
||| |
|
|
| T |
4615 |
ccc |
4613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 182 - 382
Target Start/End: Original strand, 1674224 - 1674424
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||||| |||| |
|
|
| T |
1674224 |
taattttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattcca |
1674323 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccatacc |
381 |
Q |
| |
|
||||||||||||||||||| |||| || ||||| ||||||||||||||| || ||| | ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
1674324 |
tggccttttgcctcatcttttttccattctctcccaccatcaattcattgataagcttctccaaaccctctctcttcacattcgtatcaatttccatacc |
1674423 |
T |
|
| Q |
382 |
a |
382 |
Q |
| |
|
| |
|
|
| T |
1674424 |
a |
1674424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 184 - 330
Target Start/End: Complemental strand, 20863975 - 20863829
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatg |
283 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||| || || || |||| |||||||||||||||||||||||| | |
|
|
| T |
20863975 |
attttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttcttcaactcattt |
20863876 |
T |
|
| Q |
284 |
gccttttgcctcatcttcattcctttatctcctgacatcaattcatt |
330 |
Q |
| |
|
| ||||||||||||| || ||||||| ||||| |||||||||||| |
|
|
| T |
20863875 |
gtcttttgcctcatcctccttcctttctctcccaccatcaattcatt |
20863829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 16686399 - 16686341
Alignment:
| Q |
184 |
attttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccac |
242 |
Q |
| |
|
||||||||||||||| || ||| |||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
16686399 |
attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccac |
16686341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 182 - 382
Target Start/End: Complemental strand, 28000233 - 28000033
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| || || ||||||||||||||||| ||||||||||||| |
|
|
| T |
28000233 |
taattttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactcca |
28000134 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccatacc |
381 |
Q |
| |
|
||||||||||||||||||| |||| || ||||| ||||||||||||||| || ||| | | |||| || ||||||| |||||||||||||||| |
|
|
| T |
28000133 |
tggccttttgcctcatcttttttccattctctcccaccatcaattcattgataagcttctccaaatcctctatcttcacattcatatcaatttccatacc |
28000034 |
T |
|
| Q |
382 |
a |
382 |
Q |
| |
|
| |
|
|
| T |
28000033 |
a |
28000033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 332
Target Start/End: Original strand, 24103002 - 24103147
Alignment:
| Q |
187 |
ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
286 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||| | |||| || || |||||||| |||||||||||||| ||||||| | || |
|
|
| T |
24103002 |
ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactccaagacc |
24103101 |
T |
|
| Q |
287 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattga |
332 |
Q |
| |
|
|||||| ||||| || |||| || ||||| |||||||||||||| |
|
|
| T |
24103102 |
ttttgcttcatcgtctttccgttctctcccaccatcaattcattga |
24103147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 181 - 389
Target Start/End: Original strand, 3086417 - 3086625
Alignment:
| Q |
181 |
ttaattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcc |
280 |
Q |
| |
|
||||| || ||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||| ||||| |
|
|
| T |
3086417 |
ttaatattttttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactct |
3086516 |
T |
|
| Q |
281 |
atggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccatac |
380 |
Q |
| |
|
| | ||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||| ||||||| ||||||||||||| ||||| || | |
|
|
| T |
3086517 |
gcgacattttgcctcatcttctttcctttatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattc |
3086616 |
T |
|
| Q |
381 |
cagtctccc |
389 |
Q |
| |
|
|| |||||| |
|
|
| T |
3086617 |
caatctccc |
3086625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 182 - 382
Target Start/End: Original strand, 1281112 - 1281312
Alignment:
| Q |
182 |
taattttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactcca |
281 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||| || || ||||||||||| ||| ||||||||| |||| |
|
|
| T |
1281112 |
taattttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattcca |
1281211 |
T |
|
| Q |
282 |
tggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccatacc |
381 |
Q |
| |
|
||||||||| ||||| ||| |||||| ||| || | |||||||||||||||| || | |||| ||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
1281212 |
tggccttttctctcatattctttccttcatccccggctatcaattcattgatcaacttagccacctcctctctcttcacatttgtatcgatttccatacc |
1281311 |
T |
|
| Q |
382 |
a |
382 |
Q |
| |
|
| |
|
|
| T |
1281312 |
a |
1281312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 187 - 332
Target Start/End: Complemental strand, 3848 - 3703
Alignment:
| Q |
187 |
ttgtttaagcaacacttccttaataactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
286 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| |||||||||||||| |||| || || ||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
3848 |
ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggcc |
3749 |
T |
|
| Q |
287 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattga |
332 |
Q |
| |
|
||||||||||||||| ||||||| ||||| | |||||||||||| |
|
|
| T |
3748 |
ttttgcctcatcttctttcctttctctcccaccgtcaattcattga |
3703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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