View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12630_low_3 (Length: 384)
Name: NF12630_low_3
Description: NF12630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12630_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 1664970 - 1664616
Alignment:
| Q |
18 |
ctatcaacttccatggttctttaaagaactcatggaaataaaagacagcaaagtttggactcatgtctaacttaattttacaatgaaaaagagcagaaaa |
117 |
Q |
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| T |
1664970 |
ctatcaacttccatggttctttaaagaactcatggaaataaaagacagcaaagtttggactcatgtctaacttaattttacaatgaaaaagagcagaaaa |
1664871 |
T |
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| Q |
118 |
tatggacaaataaaatcacaataacaagtacttgacatagttgacaaaactgcaaaatttaactctaaaacatcaattttaattcaaacaaactcttcaa |
217 |
Q |
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| T |
1664870 |
tatggacaaataaaatcacaataacaagtacttgacatagttgagaaaactgcaaaatttaactctaaaacatcaattttaattcaaacaaactcttcaa |
1664771 |
T |
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| Q |
218 |
tcctttattatactttcatttcaagataagaactcaaacaaataggnnnnnnnccgacaaaataacgaataggaattagttacataaaattctataagaa |
317 |
Q |
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| T |
1664770 |
tcctttattatactttcatttcaagataagaactcaaacaaataggtttttttgcgacaaaataacgaataggagttagttacataaaattctataagaa |
1664671 |
T |
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| Q |
318 |
tcacttgtctatatacaaatttgggaaacaacattaatgtttttgatgtctctgc |
372 |
Q |
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| T |
1664670 |
tcacttgtctatatacaaatttgggaaacaacattaatgtttttgatgtctctgc |
1664616 |
T |
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