View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12630_low_4 (Length: 371)

Name: NF12630_low_4
Description: NF12630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12630_low_4
NF12630_low_4
[»] chr4 (8 HSPs)
chr4 (1-356)||(20451187-20451542)
chr4 (4-356)||(20462903-20463259)
chr4 (1-236)||(20444314-20444549)
chr4 (1-221)||(20279554-20279774)
chr4 (1-199)||(20440823-20441021)
chr4 (1-183)||(20432124-20432306)
chr4 (1-167)||(20477144-20477310)
chr4 (224-356)||(20432313-20432444)
[»] scaffold0951 (2 HSPs)
scaffold0951 (110-275)||(1-162)
scaffold0951 (271-335)||(345-409)
[»] chr1 (3 HSPs)
chr1 (4-162)||(14266471-14266629)
chr1 (4-153)||(40978052-40978201)
chr1 (4-133)||(40967550-40967679)
[»] chr7 (1 HSPs)
chr7 (4-140)||(45483446-45483581)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 20451187 - 20451542
Alignment:
Q  1 ttgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataagactctttggttgataggaaagacaaaata 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20451187 ttgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggttgataggaaagacaaaata 20451286  T
Q  101 tgacaaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgccatgacctgagcggaacacctgagtatagttatgacatgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |    
T  20451287 tgacaaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgtcatgacctgagcggaacacctgaatatagttatgacatggt 20451386  T
Q  201 tgaagagatttcattagcaattgacagagagattaacacaatttcaataaaattagattccagaagtaacaaatcttaggaataggtacaaaatgattga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20451387 tgaagagatttcattagcaattgacagagagattaacacaatttcaataaaattagattccagaagtaacaaatcttaggaataggtacaaaatgattga 20451486  T
Q  301 taaatagaaaatgatggaaaatagaggaatgaatataattgaaaactgtatatagt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20451487 taaatagaaaatgatggaaaatagaggaatgaatataattgaaaactgtatatagt 20451542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 356
Target Start/End: Original strand, 20462903 - 20463259
Alignment:
Q  4 aaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataagactctttggttgataggaaagacaaaatatga 103  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  20462903 aaagcgaaggctgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctgtaagactcttttgttgataggaaagacaaaatatga 20463002  T
Q  104 caaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgccatgacctgagcggaacacctgagtatagttatgacatgattga 203  Q
    |||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| | | ||||| | ||||| |||||||||| ||||||    
T  20463003 caaatcaaatcgtctgggagattgcttaatcgatcgtgttcttcatcagagcacgccatgacctaatctgaacagcagagtaaagttatgacaagattga 20463102  T
Q  204 agagatttcattagcaattgacagagagattaacacaatttcaataaaattagattccagaagtaaca----aatcttaggaataggtacaaaatgattg 299  Q
     |||||||||||||||||  ||| |||||| |||||||||||| |||||||  |||||| ||||||||    |||||| | |||||||||||||||||||    
T  20463103 cgagatttcattagcaataaacaaagagatcaacacaatttcactaaaatttaattccaaaagtaacaaattaatcttcgaaataggtacaaaatgattg 20463202  T
Q  300 ataaatagaaaatgatggaaaatagaggaatgaatataattgaaaactgtatatagt 356  Q
    || ||||||| |  ||||||||||||  ||||||||| |||| ||| ||||||||||    
T  20463203 atgaatagaacacaatggaaaatagataaatgaatatcattggaaattgtatatagt 20463259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 20444314 - 20444549
Alignment:
Q  1 ttgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataagactctttggttgataggaaagacaaaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  20444314 ttgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaaaacatgttctataacactctttggttgataggaaagacaaaata 20444413  T
Q  101 tgacaaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgccatgacctgagcggaacacctgagtatagttatgacatgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||| | ||||| ||||||||||||||    
T  20444414 tgacaaatcaaatcgtctgagagattgcttaatcgatcatgtttttcatcagagcacgccatgacctaatctgaacagcagagtaaagttatgacatgat 20444513  T
Q  201 tgaagagatttcattagcaattgacagagagattaa 236  Q
    |||||||||||||||| ||||   ||||||||||||    
T  20444514 tgaagagatttcattaacaataagcagagagattaa 20444549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20279554 - 20279774
Alignment:
Q  1 ttgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataagactctttggttgataggaaagacaaaata 100  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  20279554 ttgaaaatgaaggttgggaatcttggtgcagattgactcccatcttgtggatagaacacatgttctataacactgttttgttgataggaaagacaaaata 20279653  T
Q  101 tgacaaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgccatgacctgagcggaacacctgagtatagttatgacatgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| | ||||| ||||||||||||||    
T  20279654 tgacaaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgcgatgacctaagccgaacagcggagtaaagttatgacatgat 20279753  T
Q  201 tgaagagatttcattagcaat 221  Q
    |||| ||||||||||||||||    
T  20279754 tgaaaagatttcattagcaat 20279774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 20440823 - 20441021
Alignment:
Q  1 ttgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataagactctttggttgataggaaagacaaaata 100  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  20440823 ttgaaagtgaaggttgggaatcttgatgcaaatggactcccatcttgtggataaaacacatgttctataagactcttttgttgataggaaagacaaaata 20440922  T
Q  101 tgacaaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgccatgacctgagcggaacacctgagtatagttatgacatga 199  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20440923 tgacaaatcaaatcgtctgagagattgcttaatcaatcatgttctttatcagagcacgccatgacctgagctgaacacctgagtatagttatgacatga 20441021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 20432124 - 20432306
Alignment:
Q  1 ttgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataagactctttggttgataggaaagacaaaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||  |||||    
T  20432124 ttgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttttggatagaacacatgttctataagactcttttgttgataggaaagaacaaata 20432223  T
Q  101 tgacaaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgccatgacctgagcggaacacctgag 183  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  20432224 tgacaaatcaaatcgtctgagagattgcttaatcgatcatgtttttcatcagagcacgccatgacctgagctgaacacctgag 20432306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 20477144 - 20477310
Alignment:
Q  1 ttgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataagactctttggttgataggaaagacaaaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20477144 ttgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttttggatagaacacatgttctataagactcttttgttgataggaaagacaaaata 20477243  T
Q  101 tgacaaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgccatgacct 167  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20477244 tgacaaatcaaatcgtctgagagattgcttaatcgatcatgtttttcatcagagcacgccatgacct 20477310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 224 - 356
Target Start/End: Original strand, 20432313 - 20432444
Alignment:
Q  224 acagagagattaacacaatttcaataaaattagattccagaagtaacaaatcttaggaataggtacaaaatgattgataaatagaaaatgatggaaaata 323  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  20432313 acagagagattaacgcaatttcaataaaattagattccagaagtaacaaatcttaggaataggtacaaaatgattg-taaatagaaaatgattgaaaata 20432411  T
Q  324 gaggaatgaatataattgaaaactgtatatagt 356  Q
    ||||||||||||||| |||||||||||||||||    
T  20432412 gaggaatgaatataagtgaaaactgtatatagt 20432444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 110 - 275
Target Start/End: Original strand, 1 - 162
Alignment:
Q  110 aaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgccatgacctgagcggaacacctgagtatagttatgacatgattgaagagat 209  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||| | ||||| |||||||||||||||||    ||    
T  1 aaatcgtctgagagattgcttaatcgatcatgtttttcatcagagcacgccatgacctaatctgaacagcagagtaaagttatgacatgattga----at 96  T
Q  210 ttcattagcaattgacagagagattaacacaatttcaataaaattagattccagaagtaacaaatc 275  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  97 ttcattagcaataaacagagagattaacacaatttcaataaaattagattccagaagtaacaaatc 162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 345 - 409
Alignment:
Q  271 aaatcttaggaataggtacaaaatgattgataaatagaaaatgatggaaaatagaggaatgaata 335  Q
    ||||||| | |||| ||||||||||||  || |||||||||  ||||||||||||| ||||||||    
T  345 aaatcttcgaaatatgtacaaaatgatcaatgaatagaaaacaatggaaaatagagtaatgaata 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 14266629 - 14266471
Alignment:
Q  4 aaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataagactctttggttgataggaaagacaaaatatga 103  Q
    |||||||||||  || || |||||| |||| |||  ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||  |    
T  14266629 aaagtgaaggtcagggattttggtgtagatagacctccatcttgtagatagaacacatgttctataagactctttagttgataggaaagacaaaatacaa 14266530  T
Q  104 caaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgccat 162  Q
     ||||||||||||| ||||||||||||||||| |||| || | ||| ||||||||||||    
T  14266529 taaatcaaatcgtccgagagattgcttaatcggtcatattctacataagagcacgccat 14266471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 40978201 - 40978052
Alignment:
Q  4 aaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataagactctttggttgataggaaagacaaaatatga 103  Q
    ||||| ||||||||| ||||| ||||| ||||||||||||||||| |||||||||| |||||  ||||||||||| |||| |||||||||||||||||||    
T  40978201 aaagtcaaggttggggatctttgtgcatatcgactcccatcttgtagatagaacacttgttcggtaagactcttttgttgttaggaaagacaaaatatga 40978102  T
Q  104 caaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcaga 153  Q
      |||||| ||||||||||||||||||||||| || || | |||||||||    
T  40978101 ataatcaattcgtctgagagattgcttaatcggtcctgctcttcatcaga 40978052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 40967679 - 40967550
Alignment:
Q  4 aaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataagactctttggttgataggaaagacaaaatatga 103  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||| | | ||||||||| ||||||||||||||||||||| ||    
T  40967679 aaagttaaggtcggggatcttggtgcagatcgactcccatcttgtggatagtacacaagttttgtgagactcttttgttgataggaaagacaaaatacga 40967580  T
Q  104 caaatcaaatcgtctgagagattgcttaat 133  Q
     ||||||| ||||||||||||| |||||||    
T  40967579 aaaatcaattcgtctgagagatcgcttaat 40967550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 45483581 - 45483446
Alignment:
Q  4 aaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataagactctttggttgataggaaagacaaaatatga 103  Q
    ||||||||||| ||| || |||||| ||||| ||  ||||||  | ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  45483581 aaagtgaaggtcggggattttggtgtagatcaacctccatcta-tagatagaacacatgttctataagactctttagttgataggaaagacaaaatacga 45483483  T
Q  104 caaatcaaatcgtctgagagattgcttaatcgatcat 140  Q
     ||||||||||||| ||||||||||||||||| ||||    
T  45483482 taaatcaaatcgtccgagagattgcttaatcggtcat 45483446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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