View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12630_low_7 (Length: 229)

Name: NF12630_low_7
Description: NF12630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12630_low_7
NF12630_low_7
[»] chr7 (7 HSPs)
chr7 (19-180)||(19634161-19634322)
chr7 (175-217)||(46735972-46736014)
chr7 (175-217)||(19628838-19628880)
chr7 (176-210)||(46736869-46736903)
chr7 (176-217)||(7669984-7670025)
chr7 (176-217)||(46370579-46370620)
chr7 (176-212)||(46370192-46370228)
[»] chr3 (7 HSPs)
chr3 (19-180)||(31783889-31784050)
chr3 (176-212)||(21630832-21630868)
chr3 (176-212)||(42371684-42371720)
chr3 (176-212)||(42402232-42402268)
chr3 (176-213)||(12012224-12012261)
chr3 (176-217)||(42402585-42402626)
chr3 (180-212)||(4333585-4333617)
[»] chr2 (4 HSPs)
chr2 (175-221)||(5602226-5602272)
chr2 (175-217)||(23212800-23212842)
chr2 (175-217)||(348254-348296)
chr2 (176-212)||(347354-347390)
[»] chr6 (2 HSPs)
chr6 (176-214)||(13044226-13044264)
chr6 (176-214)||(13060248-13060286)
[»] chr4 (3 HSPs)
chr4 (176-212)||(37082165-37082201)
chr4 (176-217)||(14203223-14203264)
chr4 (176-212)||(14203584-14203620)
[»] scaffold2013 (1 HSPs)
scaffold2013 (176-217)||(295-336)
[»] chr8 (1 HSPs)
chr8 (176-217)||(37745113-37745154)
[»] chr5 (3 HSPs)
chr5 (176-217)||(20406022-20406063)
chr5 (176-217)||(42858908-42858949)
chr5 (176-212)||(20405627-20405663)
[»] chr1 (7 HSPs)
chr1 (176-217)||(7731972-7732013)
chr1 (176-217)||(37391771-37391812)
chr1 (176-217)||(41770274-41770315)
chr1 (176-217)||(46390620-46390661)
chr1 (176-212)||(7731588-7731624)
chr1 (176-212)||(37392165-37392201)
chr1 (176-212)||(41770660-41770696)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 19634161 - 19634322
Alignment:
Q  19 tcatcagcttgtcgataatagtcaaaagttaagcaggatgaagattgggactgacgcatcctgataatctcttcatccaaattaaagcttgaagtaaatc 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19634161 tcatcagcttgtcgataatagtcaaaagttaggcaggatgaagattgggacggacgcatcctgataatctcttcatccaaattaaagcttgaagtaaatc 19634260  T
Q  119 gattagggatttcctttggaggctccattgtatattgaactgcaggttttgtcaacttattg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19634261 gattagggatttcctttggaggctccattgtatattgaactgcaggttttgtcagcttattg 19634322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 46735972 - 46736014
Alignment:
Q  175 ttattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46735972 ttattgttagtagaagtagaagttagtaaatttgtatcagtga 46736014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 19628880 - 19628838
Alignment:
Q  175 ttattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  19628880 ttattgttagtagatgtagaagttagtaaatttgtatcagtga 19628838  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 46736869 - 46736903
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgta 210  Q
    ||||||||||||||||||| |||||||||||||||    
T  46736869 tattgttagtagaagtagatgttagtaaatttgta 46736903  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 7669984 - 7670025
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||    
T  7669984 tattgttagaagaagtacaagttagtagatttgtatcagtga 7670025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 46370579 - 46370620
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||    
T  46370579 tattgttagaagaagtagatgttagtagatttgtatcagtga 46370620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 46370192 - 46370228
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatc 212  Q
    ||||||||||||||||| | |||||||||||||||||    
T  46370192 tattgttagtagaagtatatgttagtaaatttgtatc 46370228  T

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Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 31784050 - 31783889
Alignment:
Q  19 tcatcagcttgtcgataatagtcaaaagttaagcaggatgaagattgggactgacgcatcctgataatctcttcatccaaattaaagcttgaagtaaatc 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31784050 tcatcagcttgttgataatagtcaaaagttaagcaggatgaagattgggacggacgcatcctgataatctcttcatccaaattaaagcttgaagtaaatc 31783951  T
Q  119 gattagggatttcctttggaggctccattgtatattgaactgcaggttttgtcaacttattg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  31783950 gattagggatttcctttggaggctccattgtatattgaactgcagcttttgtcaatttattg 31783889  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 21630868 - 21630832
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatc 212  Q
    ||||||||||||||||||| |||||||||||||||||    
T  21630868 tattgttagtagaagtagatgttagtaaatttgtatc 21630832  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 42371684 - 42371720
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatc 212  Q
    ||||||||||||||||||| |||||||||||||||||    
T  42371684 tattgttagtagaagtagatgttagtaaatttgtatc 42371720  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 42402232 - 42402268
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatc 212  Q
    ||||||||||||||||||| |||||||||||||||||    
T  42402232 tattgttagtagaagtagatgttagtaaatttgtatc 42402268  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 12012261 - 12012224
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatca 213  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  12012261 tattgttagtagaagtagatgttagtagatttgtatca 12012224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 42402585 - 42402626
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||    
T  42402585 tattgttagaagaagtagatgttagtagatttgtatcagtga 42402626  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 4333617 - 4333585
Alignment:
Q  180 gttagtagaagtagaagttagtaaatttgtatc 212  Q
    ||||||||||||||| |||||||||||||||||    
T  4333617 gttagtagaagtagatgttagtaaatttgtatc 4333585  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 5602272 - 5602226
Alignment:
Q  175 ttattgttagtagaagtagaagttagtaaatttgtatcagtgaacga 221  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  5602272 ttattgttagtagaagtagatgttagtagatttgtatcagtgaacga 5602226  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 23212800 - 23212842
Alignment:
Q  175 ttattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  23212800 ttattgttagtagaagtagatgctagtaaatttgtatcagtga 23212842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 348296 - 348254
Alignment:
Q  175 ttattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||    
T  348296 ttattgttagtagaattagatgttagtagatttgtatcagtga 348254  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 347390 - 347354
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatc 212  Q
    |||||||||||||| |||| |||||||||||||||||    
T  347390 tattgttagtagaaatagatgttagtaaatttgtatc 347354  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 13044264 - 13044226
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcag 214  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  13044264 tattgttagtagaagtagatgttagtaaatttgtatcag 13044226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 13060286 - 13060248
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcag 214  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  13060286 tattgttagtagaagtagatgttagtagatttgtatcag 13060248  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 37082201 - 37082165
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatc 212  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37082201 tattgttagtagaagtagatgttagtaaatttgtatc 37082165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 14203264 - 14203223
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||    
T  14203264 tattgttagaagaagtagatgttagtagatttgtatcagtga 14203223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 14203620 - 14203584
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatc 212  Q
    |||||||| |||||||||| |||||||||||||||||    
T  14203620 tattgttaatagaagtagatgttagtaaatttgtatc 14203584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2013 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 336 - 295
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||    
T  336 tattgttagaagaagtagatgttagtagatttgtatcagtga 295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 37745154 - 37745113
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||||||||||||| ||||||| |||||||| |||||    
T  37745154 tattgttagtagaagtagatgttagtagatttgtattagtga 37745113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 20406022 - 20406063
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||    
T  20406022 tattgttagaagaagtagatgttagtagatttgtatcagtga 20406063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 42858908 - 42858949
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    |||||||||||||| |||| ||||||| ||||||||||||||    
T  42858908 tattgttagtagaaatagatgttagtagatttgtatcagtga 42858949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 20405627 - 20405663
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatc 212  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  20405627 tattgttagtagaagcagatgttagtaaatttgtatc 20405663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 7731972 - 7732013
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||    
T  7731972 tattgttagaagaagtagatgttagtagatttgtatcagtga 7732013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 37391812 - 37391771
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||    
T  37391812 tattgttagaagaagtagatgttagtagatttgtatcagtga 37391771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 41770315 - 41770274
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||    
T  41770315 tattgttagaagaagtagatgttagtagatttgtatcagtga 41770274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 46390620 - 46390661
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatcagtga 217  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||    
T  46390620 tattgttagaagaagtagatgttagtagatttgtatcagtga 46390661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 7731588 - 7731624
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatc 212  Q
    |||||||||||||| |||| |||||||||||||||||    
T  7731588 tattgttagtagaattagatgttagtaaatttgtatc 7731624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 37392201 - 37392165
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatc 212  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  37392201 tattgttagtagaagtagatgttggtaaatttgtatc 37392165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 41770696 - 41770660
Alignment:
Q  176 tattgttagtagaagtagaagttagtaaatttgtatc 212  Q
    |||||||||||||| |||| |||||||||||||||||    
T  41770696 tattgttagtagaaatagatgttagtaaatttgtatc 41770660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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