View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12631_high_4 (Length: 232)
Name: NF12631_high_4
Description: NF12631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12631_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 47894612 - 47894413
Alignment:
| Q |
18 |
atccttaatacaagaagaaacctaaatgtcaaaaggaattaagaaaacagatacagagacaccaaaaagccatactcctcaacaatgcacagagagctgt |
117 |
Q |
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| T |
47894612 |
atccttaatacaagaagaaacctaaatgtcaaaaggaattaagaaaacagatatagagacaccaaaatgccatactcctcaacaatgcacagagagctgt |
47894513 |
T |
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| Q |
118 |
tttatttctttttgcatcattcaactatacaaagtaaaatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894512 |
tttatttctttttgcatcattcaactatacaaagtaaaatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacag |
47894413 |
T |
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