View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12631_low_1 (Length: 734)
Name: NF12631_low_1
Description: NF12631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12631_low_1 |
 | |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 698; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 6 - 719
Target Start/End: Complemental strand, 164702 - 163989
Alignment:
| Q |
6 |
caaaggatggggatagtaaagatcttcctatgagacataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcacacattgtgataaat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
164702 |
caaaggatggggatagtaaagatcttcctatgagacataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcacacattgtgatcaat |
164603 |
T |
|
| Q |
106 |
taaagataaagattctaacctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagat |
205 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
164602 |
taaagataaagactctaacctttgcacataggtgacgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagat |
164503 |
T |
|
| Q |
206 |
gagtggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgtaaaaaacaaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
164502 |
gagtggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgtaaaaaacaaa |
164403 |
T |
|
| Q |
306 |
ggtgaaaatcagatagaataaactctcgattcatttcacatgtatattgtattggataacatcgcatgactatcactagttataagctttctattatggt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
164402 |
ggtgaaaatcagatagaataaactctcgattcatttcacatgtatattgtattggataatatcgcatgactatcactagttataagctttctattatggt |
164303 |
T |
|
| Q |
406 |
ttataattagaattctttaactgttatcatggagattcgttatgttcctacttgtatgtatttgttcctaacattgcagtaactgacagtgctatttata |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
164302 |
ttataattagaattctttaactgttatcatggagattcgttatgttcctacttgtatgtatttgttcctaacattgcagtaactgacagtgctatttata |
164203 |
T |
|
| Q |
506 |
taaagcgttctttcattctaatgcaactcaatagttcatttctaaccctttttatggtatcatgagcttttgcataacaacgaacttgatccatattttt |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
164202 |
taaagcgttctttcattctaatgcaactcaatagttcatttctaaccctttttatggtatcatgagcttttgcataacaacgaacttgatccatattttt |
164103 |
T |
|
| Q |
606 |
tgaacactctcagccatgtctgttgaatctctatccactactgatattcttgtcaataatactcaattggttgtttctttcaacaaccatgcatctgcca |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
164102 |
tgaacactctcagccatgtctgttgaatctctatccactactgatattcttgtcaataatactcaattggttgtttctttcaacaaccatgcatctgcca |
164003 |
T |
|
| Q |
706 |
aactaagtgtaaca |
719 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
164002 |
aactaagtgtaaca |
163989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 103742 - 103448
Alignment:
| Q |
6 |
caaaggatggggatagtaaagatcttcctatgagacataaaatggatcattatccctcctat------gttaaaaaggatgtgtaatttcacacattgtg |
99 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| | |||| |||| |||||| | |||||||||| |
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|
| T |
103742 |
caaaggatggggatagtaaatatcttcctgtgagacataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacattgta |
103643 |
T |
|
| Q |
100 |
ataaattaaagataaagattctaacctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactg |
199 |
Q |
| |
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| ||||||||| || || ||| ||||||||||||||||| |||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
103642 |
aacaattaaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctctcaactg |
103543 |
T |
|
| Q |
200 |
taagatgagtggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctg |
294 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
103542 |
taagatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgacaataacaccacattttagctg |
103448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 92566 - 92882
Alignment:
| Q |
6 |
caaaggatggggatagtaaagatcttcctat-gagacataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcacacattgtgataaa |
104 |
Q |
| |
|
||||||||| |||||||| | |||||||| | ||| ||||||||||| ||||||||||| || |||||| || |||||||| |||| ||| ||| || || |
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|
| T |
92566 |
caaaggatgaggatagtagatatcttcctgttgag-cataaaatggaacattatccctcatacgttaaagag-atgtgtaaattcatacactgtcatgaa |
92663 |
T |
|
| Q |
105 |
ttaaagataaagattctaacctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaaga |
204 |
Q |
| |
|
||| ||| ||||| || |||||||||||||||||||||| ||| |||| ||| ||| |||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
92664 |
ttagagacaaagagcctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaaga |
92763 |
T |
|
| Q |
205 |
tgagtggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgtaa-aaaaca |
303 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||| | |||||||| |||||||||||||||| || |||| |
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| T |
92764 |
cgagtggtgtgattggaccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacattttagctgaaattaaact |
92863 |
T |
|
| Q |
304 |
aaggtgaaaatcagataga |
322 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
92864 |
tagatgaaaatcagataga |
92882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 123 - 296
Target Start/End: Original strand, 5670360 - 5670533
Alignment:
| Q |
123 |
acctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggac |
222 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| |||||||||| ||| ||| |||||||||||||||||| ||||||||||||||| || |||| |
|
|
| T |
5670360 |
acctttgcacatagatggcgtactttttgccaattaactttttcataatgttctgtaaggagttcttctctcaactttaagatgagtggtgttattggac |
5670459 |
T |
|
| Q |
223 |
ctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgta |
296 |
Q |
| |
|
| |||||||||||||| |||||||||||||| ||||||||||| || |||||||||||| ||||| |||||||| |
|
|
| T |
5670460 |
cgacaaacctcttcccatacaagtaagacataggcatgtataccaatcgacaataacacaacattctagctgta |
5670533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 123 - 295
Target Start/End: Original strand, 5722474 - 5722646
Alignment:
| Q |
123 |
acctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggac |
222 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||| |||||||||||||| ||| |||||||||||||||||| |||||| | ||||||||| |||| |
|
|
| T |
5722474 |
acctttgcacataggtgacgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctcaactttaagatcaatggtgtgattggac |
5722573 |
T |
|
| Q |
223 |
ctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgt |
295 |
Q |
| |
|
| ||||||||||| || |||||||||||||| ||||||||||| || |||||||||||| ||||| ||||||| |
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|
| T |
5722574 |
cgacaaacctctttccatacaagtaagacataggcatgtataccaatcgacaataacacaacattctagctgt |
5722646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 123 - 295
Target Start/End: Original strand, 5692134 - 5692306
Alignment:
| Q |
123 |
acctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggac |
222 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| |||||||||||||| ||| |||||||||||||||||| |||| | | ||||||||| |||| |
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|
| T |
5692134 |
acctttgcacatagatggcgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctcaactttaaggtcaatggtgtgattggac |
5692233 |
T |
|
| Q |
223 |
ctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgt |
295 |
Q |
| |
|
| ||||||||||| || |||||||||||||| ||||||||||| || |||||||||||| ||||| ||||||| |
|
|
| T |
5692234 |
cgacaaacctctttccatacaagtaagacataggcatgtataccaatcgacaataacacaacattctagctgt |
5692306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 123 - 290
Target Start/End: Complemental strand, 13052544 - 13052377
Alignment:
| Q |
123 |
acctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggac |
222 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||| | |||||| |||||||| |||| | ||||||||||||||||||||||||||||||||| ||| |
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|
| T |
13052544 |
acctttgcacattggtgacgtgatttgaaccaatcaactttttcgtaaggttgattatgaatttcttctctcaactgtaagatgagtggtgtgattcgac |
13052445 |
T |
|
| Q |
223 |
ctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacatttta |
290 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
13052444 |
ccacaaacctcttcccgtacaagtaagacataggcatgtatgtcaatcgacaataacaccacatttta |
13052377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 13052645 - 13052576
Alignment:
| Q |
6 |
caaaggatggggatagtaaagatcttcc--tatga---gacataaaatggatca-ttatccctcctatgt |
69 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
13052645 |
caaaggatgaggatagtaaagatcttcctgtatgagacgacataaaatggatcatttatccctcctatgt |
13052576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 151 - 294
Target Start/End: Original strand, 12137706 - 12137849
Alignment:
| Q |
151 |
tccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggacctacaaacctcttcccgtacaagtaaga |
250 |
Q |
| |
|
|||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||| | ||| ||||| ||||| || ||||||||||| |
|
|
| T |
12137706 |
tccaattaacttttgcataaggttcagtatagagttcttctctcaactgtaagatgagcggtgtgattgaacccacaaatctctttccatacaagtaaga |
12137805 |
T |
|
| Q |
251 |
catcggcatgtatactaaccgacaataacaccacattttagctg |
294 |
Q |
| |
|
||| ||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
12137806 |
cataggcatgtataccaatcgacagtaacaccacattttagctg |
12137849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 1941994 - 1942043
Alignment:
| Q |
209 |
tggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggca |
258 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||| |||| |||| |
|
|
| T |
1941994 |
tggtgtgattggaccaacaaacctctttccgtacaagtaacacattggca |
1942043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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