View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12631_low_10 (Length: 218)
Name: NF12631_low_10
Description: NF12631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12631_low_10 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 4236742 - 4236525
Alignment:
| Q |
1 |
gtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagatggtggtaaaagacaatggtttaac |
100 |
Q |
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| T |
4236742 |
gtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagatggtggtaaaagacaatggtttaac |
4236643 |
T |
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| Q |
101 |
attgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacggcagtggaagcttgccaacatgctggtatgattgtcaaaattatcaca |
200 |
Q |
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| T |
4236642 |
attgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacgacagtggaagcttgccaacatgctggtgtgaatgtcaaaatgattaca |
4236543 |
T |
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| Q |
201 |
ggaattgctaaaatatct |
218 |
Q |
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| T |
4236542 |
ggtattactaaaatatct |
4236525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 6185835 - 6185618
Alignment:
| Q |
1 |
gtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagatggtggtaaaagacaatggtttaac |
100 |
Q |
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|||||||||||||||||||||||| |||| |||| |||||||| |||| | | ||||||||| | | |||||||||||||||||| |||| |||||| |
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| T |
6185835 |
gtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagatggtggtaaaagagaatgatttaac |
6185736 |
T |
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| Q |
101 |
attgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacggcagtggaagcttgccaacatgctggtatgattgtcaaaattatcaca |
200 |
Q |
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| T |
6185735 |
attgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgccggtgtgaatgtcaaaatgattaca |
6185636 |
T |
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| Q |
201 |
ggaattgctaaaatatct |
218 |
Q |
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| T |
6185635 |
ggtattactataatatct |
6185618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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