View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12631_low_3 (Length: 438)
Name: NF12631_low_3
Description: NF12631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12631_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 31200386 - 31200804
Alignment:
| Q |
18 |
gtgctctgaaccaaacacaagcataaaaaaggagcttgagcatgaacctgcagtcacactccagaaattgtgtttccataaaatcgcatttttgaagaaa |
117 |
Q |
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| T |
31200386 |
gtgctctgaaccaaacacaagcataaaaaaggagcttgagcatgaacctgcagtcacactccagaaattgtgtttccataaaatcgcatttttgaagaaa |
31200485 |
T |
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| Q |
118 |
atgtacatgattttggatttttcaccctgtatcatgcatacttactagtcaataagatagcattcagaaatcaacaaacagttttataaaattaatattt |
217 |
Q |
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| T |
31200486 |
atgtacatgattttggatttttcaccctgtatcatgcatacttactagtcaataagatagcattcagaaatcaacaaacagttttataaaattaatattt |
31200585 |
T |
|
| Q |
218 |
aactaatgtatacttctatgtcattcattcattataaggatcaagtactatactacactattgagaaataacaactgaatcggacaattcaaccgattga |
317 |
Q |
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| T |
31200586 |
aactaatgtatacttctatgtcattcattcattataaggatcaagtactatactacactattgagaaataacaactgaatcggacaattcaaccgattga |
31200685 |
T |
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| Q |
318 |
gccttacaccaaatctttaatacggttcagttactttgggggtttgatcg-----------cagttcgaacagttcaagatagttgaactataatccaaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
31200686 |
gccttacaccaaatctttaatacggttcagttactttgggggtttgatcgcagtttcgtctcagttcgaacagttcaagatagttgaaccataatccaaa |
31200785 |
T |
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| Q |
407 |
ttctccccgatttgatgtc |
425 |
Q |
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||||||||| ||||||||| |
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| T |
31200786 |
ttctccccggtttgatgtc |
31200804 |
T |
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