View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12631_low_5 (Length: 272)
Name: NF12631_low_5
Description: NF12631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12631_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 48447790 - 48448028
Alignment:
| Q |
15 |
gaaggaaatataaaacctcacttaaaccttgttcattcatccaatctttgaacgcgatgctcctccctcctcttcttcacatcaccatcaccattctcta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48447790 |
gaaggaaatataaaacctcacttaaaccttgttcattcatccaatctttgaacgcgatgctcctccctcctcttcttcacatc------accattctcta |
48447883 |
T |
|
| Q |
115 |
cacataaataaatagggtttcttcttttctttcaacaacggtctttcgatttcattctcaatcgctcttcgatttcaccattcttcatacgaagaagatg |
214 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48447884 |
caaataaataaatagggtttcttcttttctttcaacaacggtctttcgatttcattctcaatcgctcttcgatttcaccattcttcatacgaagaagatg |
48447983 |
T |
|
| Q |
215 |
cctcctcgctccaaacgaaaaccggtcccaccaaccactgatgtc |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48447984 |
cctcctcgctccaaacgaaaaccggtcccaccaaccactgatgtc |
48448028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University