View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12631_low_6 (Length: 259)
Name: NF12631_low_6
Description: NF12631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12631_low_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 2323474 - 2323715
Alignment:
| Q |
13 |
caaagggagaagaagtaaatgaatttgcctaacactaccatcgttttgtcaagtctcataataataaataaaagagtatgataaaagaataatcttgttc |
112 |
Q |
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| T |
2323474 |
caaacggagaagaagtaaatgaattttcctaacactaccatcgttttgtcaagtctcataataataaataaaagagtatgataaaagaataatcttgttc |
2323573 |
T |
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| Q |
113 |
aatgtttttgattacacagctatatatgacgtaacactatagcagccaattttctaacatcaaaacttgataatttgtgggtgatttgttaaatatggta |
212 |
Q |
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| T |
2323574 |
aatgttttt-attacactgc----tatgacgtaacactatagcagccaattttatgacatcaaaacttgataatttgtgtgtgatttgataaatatggtg |
2323668 |
T |
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| Q |
213 |
aaagataatgtacgcaaattaatgaaaaataatttaatgctgagaag |
259 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2323669 |
caagataatgtacgcaaattgatgaaaaataatttaatgctgagaag |
2323715 |
T |
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