View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12632_high_1 (Length: 331)
Name: NF12632_high_1
Description: NF12632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12632_high_1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 29736706 - 29736382
Alignment:
| Q |
7 |
tccaataatataatatacatagcataagattaagattaagatatagactcaattcattcaaatcaagcaacaaaaatttaagctccacacaaattaatct |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29736706 |
tccaatcatataatatacatagcataagattaagattaagatatagactcaattcattcaaatcaagcaacaaaaatttaagctccacacaaattaatct |
29736607 |
T |
|
| Q |
107 |
tagttttaatttgctcactatgttctggatcagctaactagcttcaaaagtaagttgttcattttttagaatttaattactatttctacttgatacttta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29736606 |
tagttttaatttgctcactatgttctggatcagctaactagcttcaatagtaagttgttcattttttagaatttaattactatttctacttgatacttta |
29736507 |
T |
|
| Q |
207 |
attttaattgcttgttatttgtttccttttcagttcaattcaactaaacagaagcgaagcaaaatgaattaccatgttccagatttcgatattcaaatgg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29736506 |
attttaattgcttgttatttgtttccttttcagttcaattcaactaaacagaagcgaagcaaaatgaattaccatgttccagatttcgatattcaaatgg |
29736407 |
T |
|
| Q |
307 |
atgatgaagatgaataccctataca |
331 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
29736406 |
atgatgaagatgaataccctataca |
29736382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University