View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12633_high_3 (Length: 407)
Name: NF12633_high_3
Description: NF12633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12633_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 20750619 - 20750837
Alignment:
| Q |
9 |
atgagatggacatcacaccatgaacaaattgaagaacactaacatggtttatgcttagacaaaaacaaagggttgatcatcaaacaaacacaaacgcatt |
108 |
Q |
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| T |
20750619 |
atgagatatacaccacaccatgaacaaattgaagaacactaacatggtttatgcttagacaaaaacaaagggttgatcatcaaacaaacacaaaagcatt |
20750718 |
T |
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| Q |
109 |
ttgggagctaccatggcaagaaatgatgatgttggcgttgagtgaccacatgttggtttgatggcggcacaaccttaagagtttatcataccaccacaaa |
208 |
Q |
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| T |
20750719 |
ttgggagctaccatggcaagaaatgatgatgttggcgttgagtgaccccatgttggtttcatggcgacacaaccttaagagtttatcacaccaccacaaa |
20750818 |
T |
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| Q |
209 |
gtcgtggttacatcaataa |
227 |
Q |
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| T |
20750819 |
gtcgtggttacatcaataa |
20750837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 20750901 - 20750984
Alignment:
| Q |
306 |
gagtatgaattaatttacacgagtatcatactagttagtttacataaaacagatgcataatttcatactcttaaaagatacatt |
389 |
Q |
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| T |
20750901 |
gagtatgaattaatttacacgagtatcatactaattagtttacataaaacagatgcataatttcatactcttaaaagatacatt |
20750984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 16748706 - 16748746
Alignment:
| Q |
193 |
atcataccaccacaaagtcgtggttacatcaataaaaattg |
233 |
Q |
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| T |
16748706 |
atcacaccaccacaaagtcgtggttacatcagtaacaattg |
16748746 |
T |
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