View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12633_high_4 (Length: 382)
Name: NF12633_high_4
Description: NF12633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12633_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 98 - 364
Target Start/End: Complemental strand, 42481622 - 42481356
Alignment:
| Q |
98 |
ttcctttcctttcatcagggaagacataccttcttggacataagaatctatggagctggggcacaggtaaagcattttttgaatcataaagtgtagctat |
197 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42481622 |
ttcctttcctttcatcagggaagacatatcttcttggacataagaatctatggagctggggcacaggtaaagcattttttgaatcataaagtgtagctat |
42481523 |
T |
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| Q |
198 |
ttttaaaatcaccagtgattctgtcaaaggaaggtaactcataaacaatatagtatatattactttttcatttcaagaataacatggaactagcttgcat |
297 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42481522 |
ttttaaaatcaccagtgattctgtcaaatgaaggtaactcataaacaatatagtatatattactttttcatttcaagaataacatggaactagcttgcat |
42481423 |
T |
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| Q |
298 |
atannnnnnnnnnnnntcaatttgggataatatctgaaatggttatatatattatgtcagagaaatt |
364 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42481422 |
atatgtgtgtgtgtgttcaatttgggataatatctgaaatggttatatatattatgtcagagaaatt |
42481356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42481729 - 42481683
Alignment:
| Q |
1 |
caagacataaaagaaatcatataatgcctaacctgcaaaacatcttc |
47 |
Q |
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| T |
42481729 |
caagacataaaagaaatcatataatgcctaacctgcaaaacatcttc |
42481683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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