View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12633_high_7 (Length: 262)
Name: NF12633_high_7
Description: NF12633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12633_high_7 |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 31443687 - 31443919
Alignment:
| Q |
11 |
cagagaaaggtacgaaattgtaatcaccgcgatgttcggatactagataggattgtgagtgtcgtgcagatcgattaagatgcattttaacgaaattaga |
110 |
Q |
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| T |
31443687 |
cagagaaaggtacgaaattgtaatcaccgcgatgttcggatactagataggattgtgagtgtcgtgcagatcgattaagatgcattttaacgaaattaga |
31443786 |
T |
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| Q |
111 |
atcagagataagagtgttccatgatttactcacacatttcatcttcatcaaagttttcaccgtaagccaggaaaggatttcagcaatgatatcgtcggga |
210 |
Q |
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| T |
31443787 |
atcagagataagagtgttccatgatttactcacacatttcatcttcatcaaagttttcaccgtaagccaggaaaggatttcggcaatgatatcgtcggga |
31443886 |
T |
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| Q |
211 |
aagactggtgaagacgacagcgacattcgtgat |
243 |
Q |
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| T |
31443887 |
aagactggtgaagacgacagcgacattcgtgat |
31443919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 43002136 - 43002259
Alignment:
| Q |
53 |
ctagataggattgtgagtgtcgtgcagatcgattaagatgcattttaacgaaattagaatcagagataagagtgttccatgatttactcacacatttcat |
152 |
Q |
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| T |
43002136 |
ctagatatgagtgtgagttttgtgcagatcgattaagatgcattctaacgaattcatgatcaaagataagagtgtttcatgacttactcaaacatttcat |
43002235 |
T |
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| Q |
153 |
cttcatcaaagttttcaccgtaag |
176 |
Q |
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| T |
43002236 |
tttcatcaaaggtttcaccgtaag |
43002259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 13888855 - 13888953
Alignment:
| Q |
94 |
attttaacgaaattagaatcagagataagagtgttccatgatttactcacacatttcatcttcatcaaagttttcaccgtaagccaggaaaggatttca |
192 |
Q |
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|||||| |||| ||||||||| |||| |||||||||||||| ||||| ||||| |||| ||||||||| | |||||||||||||||||| ||||||||| |
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| T |
13888855 |
attttagcgaagttagaatcacagatgagagtgttccatgacttactaacacacttcaacttcatcaatggtttcaccgtaagccaggataggatttca |
13888953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 7312047 - 7312140
Alignment:
| Q |
72 |
tcgtgcagatcgattaagatgcattttaacgaaattagaatcagagataagagtgttccatgatttactcacacatttcatcttcatcaaagtt |
165 |
Q |
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| T |
7312047 |
tcgtgcagatctattgaggtgcattttgatgaatttaggatcagagataatagtgttccaagacttactcacacacttgatctgcatcaaagtt |
7312140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 7308466 - 7308547
Alignment:
| Q |
62 |
attgtgagtgtcgtgcagatcgattaagatgcattttaacgaaattagaatcagagataagagtgttccatgatttactcac |
143 |
Q |
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| T |
7308466 |
attgtgggtttcgtgtagatcgatcaagatgcaatttgacgaatttaggattagagataagagtgttctaagacttactcac |
7308547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 7327466 - 7327375
Alignment:
| Q |
72 |
tcgtgcagatcgattaagatgcattttaacgaaattagaatcagagataagagtgttccatgatttactcacacatttcatcttcatcaaag |
163 |
Q |
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| T |
7327466 |
tcgtgcagatctattgaggtgcattttgatgaatttaggatcagaaataatagtgttccaagacttacacacacacttgatctgcatcaaag |
7327375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 22533940 - 22533811
Alignment:
| Q |
62 |
attgtgagtgtcgtgcagatcgattaagatgcattttaacgaaattagaatcagagataagagtgttccatgatttactcacacatttcatcttcatcaa |
161 |
Q |
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| T |
22533940 |
attgtgggtttcttgcagaccgattaaggtgcattttggcgaatttaggatcagagataatggttttccaggacttactgacgcatttcaactgcatcag |
22533841 |
T |
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| Q |
162 |
agttttcaccgtaagccaggaaaggatttc |
191 |
Q |
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| T |
22533840 |
aagtttaactgtaagccacgataggatttc |
22533811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 7306916 - 7307008
Alignment:
| Q |
72 |
tcgtgcagatcgattaagatgcattttaacgaaattagaatcagagataagagtgttccatgatttactcacacatttcatcttcatcaaagt |
164 |
Q |
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| T |
7306916 |
tcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagt |
7307008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 23506 - 23410
Alignment:
| Q |
74 |
gtgcagatcgattaagatgcattttaacgaaattagaatcagagataagagtgttccatgatttactcacacatttcatcttcatcaaagttttcac |
170 |
Q |
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| T |
23506 |
gtgcagatctaaaaagatgcattttaacgaatatcgaatcagaaataagagtgttccatgctttactcacgcacttcatcttcatcaaaggtttcac |
23410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 42297403 - 42297303
Alignment:
| Q |
79 |
gatcgattaagatgcattttaacgaaattagaatcagagataagagtgttccatgatttactcacacatttcatcttcatcaaagttttcaccgtaagcc |
178 |
Q |
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||||||| |||||| ||||| ||||| |||| || ||||| ||||||||||| || |||| ||||||||||||| ||||| || |||||| | ||||| |
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| T |
42297403 |
gatcgataaagatgaattttgacgaatttaggattggagattagagtgttccaagaaatacttacacatttcatctgcatcagagatttcactggaagcc |
42297304 |
T |
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| Q |
179 |
a |
179 |
Q |
| |
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| T |
42297303 |
a |
42297303 |
T |
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